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GT16860

CSHL Arabidopsis genetrap mutant lines

Original: GT16860

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16860

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4790412 [Map]; Strand: w
      • AT5G14810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 4; Position: 15560659 [Map]; Strand: c
    Flanking Genome Sequence: GT16860 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATGTATAT CCATGTTCTC 
    TCATCATTTG TAAATTTCTA TTCACGAACT TAAATTTCCA GGACTTGAAT
    CTGATATGTA ACCCTATTGG AAGTGATTCA TGATCCCCTT GGTCTTGTGA
    GCTGGTTTTA AATTTGAACT TCCAGGATTT GAGAGAATTA CTAGCGCTTC
    TTCTGGACAT GGACGGTAGC ACTTCCACAA CTAGAGTGTA ATTCATCAAC
    AACAAATCCA ATTGATGACA GCATTTGATT CATTGTTGCA TCAACTTTAT
    CAAAATCCTT AAGGTTTGAA CGAACCTTCT GAAGTTGTGA GACACCTTCT
    ATGTCTATGG AGTGAAACGC GGCTTGATCT TGAATCAACG GCTTATGTTC
    AATCCATGAA TCTGTTTCAC ACTCTTCTAT GTTGAATCCA AATACGTCCC
    CAGCATCCGA ATTTTGATCA TCATCACTAG ACATAGCATC ATCAATTTCA
    ACCAAATAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4796409 [Map]; Strand: w
      • AT5G14830.1 - [+] show detail - transposable element gene
        Distance: 0; Region: intron5 (NonCoding)
    Flanking Genome Sequence: GT16860 - 5-prime edge
    CTTTCTCCCT GGATATCACA CACTTTCAGC TAATGTCTGA TAAGAGAGAA 
    CATCAAGAGA TGTTCATTGT GGCCAGGATT GTTGATGTGA GATGTTTGCT
    TAGCATGATA CTGATAGGTT GAAGATACCC TTGGCTTTTA TGAAGAAGAA
    AGTGAGAAGT GCAAGGCGAG CTCGGGTGTG GGAAGCAAAA GCGAGCTCGA
    GTGTGGGAAG CAAAGGCGAT CTCGAGTGTG GGAAGCAAAG GCGAGCGAGC
    TCGAGTGTGG GAAGCAAAGG CGAGCGAGCT CGAGTGTGGG AAGCAAAGGC
    GAACTCGAGT GTGGGAAGCA AAGGCGAACT CGAGTGTGGG AAGCAAAGGC
    GATCTCGAGT GTGGGAAGCA AAGGCGATCT CGAGTGTGGG AAGCAAGGAA
    CAAGTATGAA AGTGGCTAAG AGTAAGAAGT GAAGAAGTGT TGTGAAACCT
    CTAATTGTTC TAGAGGGTTT CACTTTCCTT TTATTGTTGC GTTGTCGTTT
    TGATTAAACT CGAGTGTATT TAATGGAGCC CAACCTTTAG GGTTTTCCTT
    ATCTTATGAA AAATCACATT AATCATCTTA ACCTAAGTTT CTTCTGCCTC
    TCATCTCGCC AGCTCACAAC ACACGTGCTT TGCTTAACAT CCCCTGACTT
    CACATTGCCA GCTCGCCAGC TCACAAACAC

AT4G32212.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT5G14810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retrotransposon family
Link
InterPro Scan - TAIR

AT5G14830.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retrotransposon family
Link
InterPro Scan - TAIR