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GT16862

CSHL Arabidopsis genetrap mutant lines

Original: GT16862

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16862

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18428476 [Map]; Strand: w
      • AT2G44680.2 - [+] show detail - casein kinase II beta subunit 4
        Distance: -119; Region: promoter
      • AT2G44680.1 - [+] show detail - casein kinase II beta subunit 4
        Distance: -119; Region: promoter
      • AT2G44690.1 - [+] show detail - Arabidopsis RAC-like 9
        Distance: -788; Region: promoter
    Flanking Genome Sequence: GT16862 - 3-prime edge 
    ATGAAACGGT AGAGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CATAAGGCCC ATCAGAAAAG CCCATTTCTA AATACTAGAA TTTTAAAAAA 
    TTAAACAATG ATTAAAAAAA AAAAATTCAA GGGGAAAAAA CCAAACCGGT 
    GGGGAGGGGG AAAAACCCCC GGGGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18428526 [Map]; Strand: w
      • AT2G44680.2 - [+] show detail - casein kinase II beta subunit 4
        Distance: -169; Region: promoter
      • AT2G44680.1 - [+] show detail - casein kinase II beta subunit 4
        Distance: -169; Region: promoter
      • AT2G44690.1 - [+] show detail - Arabidopsis RAC-like 9
        Distance: -738; Region: promoter
    Flanking Genome Sequence: GT16862 - 5-prime edge 
    TCCTACTTTC TCCCTGGCCT TATGACACTG ACAGTTGTAA TACAAAGATT 
    CACGTAGAAG GAAACATTTT TTTGTACTTA AACTATGATT CCAAATTATA 
    TCTTAGGAAG AAAGAAATCA TAAAATTCAT TTTTTTTTGT ATCAACACGG 
    TAGTAATAAT GGACTTGCCT TTCCATCTTT GTTAATGATG ATGTGTTTGG 
    GGGTCGATCC ATTGTCCAAA CTTAAATCGA AAAAAAAAAC CAATGGTCCT 
    AGAGAAATTA AAATTTCCCC TTTTGGAAAA ATAAGCCTGG AAAAGGAACC 
    GAATTTAAAA AAATTGGTTT GGAAAAACCC CCCCTTTTTT TTCTTTTGGC 
    GAAAAAATTG GACCCTTGGA ATTGGCTTGG TTGGGGAAAA AAAAAAAACC 
    CCTATATT

AT2G44680.1

Model type
Protein coding
Short Description
casein kinase II beta subunit 4
Curator Summary
Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.
Computational Description
casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.1); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44680.2

Model type
Protein coding
Short Description
casein kinase II beta subunit 4
Curator Summary
Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.
Computational Description
casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.2); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44690.1

Model type
Protein coding
Short Description
Arabidopsis RAC-like 9
Curator Summary
A member of ROP GTPase gene family.
Computational Description
Arabidopsis RAC-like 9 (ARAC9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like 3 (TAIR:AT4G35020.3); Has 24763 Blast hits to 24736 proteins in 683 species: Archae - 8; Bacteria - 73; Metazoa - 12794; Fungi - 3855; Plants - 2697; Viruses - 20; Other Eukaryotes - 5316 (source: NCBI BLink).
Link
InterPro Scan - TAIR