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GT16873

CSHL Arabidopsis genetrap mutant lines

Original: GT16873

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16873

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2365490 [Map]; Strand: c
      • AT3G07390.1 - [+] show detail - auxin-responsive family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16873 - 3-prime edge 
    TTTCATCCCT ACACATGTCC CTGGATCTTA AAATACCTCT TATCAAACAC 
    CAAACCACAC CAGAACAGAA CTCAGCCATG GGTTCTCCTT CTTCTTCTCT 
    TCTAATGCTA GCCTGTGCTT GTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29715483 [Map]; Strand: w
      • AT1G78990.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: -514; Region: promoter
      • AT1G78995.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16873 - 5-prime edge 
    TACTTTCTCC CTGCTCTCCA TATGACTATA ATAATAATTT CTTACCTATA 
    ACTATTAGAC TATTATTGTT TTGGATGCCC CATGTCATCG CTGAATTATC 
    TGTTTGAATT GTCAACTTAT ATACCAATAA TAGAAGATGA AAAATTAACG 
    AAATCGAAAC GAGATAATAT GAGATCGATA TCTCAATTCT TAGCTTTCAC 
    GCAAAGGGTC ACTTGAGTTT TGAGTAACAC GAAATTGTAA ATGAAGAATT 
    CAGAGAGATA TAAACAGAAA CAGAGAGAGA GAGAGAGATA CCTTCTGATA 
    TTGATCGGTC CTTCTCCGTC TCCGCTGCGA ATGCAAGTGT TTACGCATTT 
    GACTGTACAT TTCTCTGCGT TTTTGGATTT TGGTCGTTGG ATCCTCTGTT 
    TCTTACAGTC TTCCCCTGAC AGCGTTTGCG GTACGTTAGA TAACGTTTCT 
    CCATCTTGGG GGGGCGGTGG AAGCTCTGCT GA

AT1G78990.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G32910.1); Has 2253 Blast hits to 2240 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 21; Plants - 2228; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78995.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07390.1

Model type
Protein coding
Short Description
auxin-responsive family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR