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GT16877

CSHL Arabidopsis genetrap mutant lines

Original: GT16877

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16877

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1285964 [Map]; Strand: w
      • AT2G04030.1 - [+] show detail - Chaperone protein htpG family protein
        Distance: 0; Region: exon19 (3UTR)
      • AT2G04030.2 - [+] show detail - Chaperone protein htpG family protein
        Distance: 0; Region: exon19 (3UTR)
    Flanking Genome Sequence: GT16877 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTGGGA 
    AAGATAAAGC GTTCTGTCAA AAAAAAATCA CTGCAAACAA AAGAAGGTAA 
    AAAAGGATCA ATCTTGCCAA GGATCACTCT CTGCCCTCAC TTCAGATGGT 
    TCAACTACCT CTGTTTCTCC GCTTTTGTCA TCTCCTTCAT CGTCCACTCG 
    ACGATNNCTT CTTCTTCTTC AACTCTGCCC CATCTTCCTC CAACCGCCAT 
    TGCCATCATC TCATATATCT TGTTCCCGAG CTCGGCCGGG CTATCAGGCT 
    GTACAACAAA CACATATAAG TGAGTAAAAT GGTCCAAGAC TTTTACTGGG 
    AAACAAGAAA GGTTTCAGAT TTCTTACAGT GAATCCACTT GATATTATAG 
    CAGTGTCATA CAAGAGATCG ACCACTCTTG TTGCTTCAGT GCTCTCTGGT 
    GCATTCTTAC AAGCAGCCTG TACCAAAAGA ATACAAAAAT TAATAAGGCT 
    TTTTCGAGAC AAGAGATTTC TGAGAGAATA TTATACCACA CACTTACGTT 
    CAAGTCTTTG ATGATGGGAT GATCTGGATT GATCTCTAGT ATTCTCCTAC 
    CTCTCATGAA CTCCAGGCTT GAAGTGTCTC CAAGAGCCTG TGCCTTCATT 
    AGCCTTTCAC AATGAATAAG CACATAAGTC AATGAACAAG CACATAAGTT 
    TTATGGTATG TGGATTTCAG GTTATAAAGC TTTTGCTGAA GTACTAACCT 
    TTTCATATTA GCTGACCACC CGAATTTGCC AGAGACAAGC ACACAAGGAG 
    AAGAGCTCAA ACGGTTTGAG ACTTGG

AT2G04030.1

Model type
Protein coding
Short Description
Chaperone protein htpG family protein
Curator Summary
Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.
Computational Description
CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 89.1 (TAIR:AT3G07770.1); Has 8928 Blast hits to 8878 proteins in 2458 species: Archae - 4; Bacteria - 3413; Metazoa - 2083; Fungi - 313; Plants - 465; Viruses - 0; Other Eukaryotes - 2650 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04030.2

Model type
Protein coding
Short Description
Chaperone protein htpG family protein
Curator Summary
Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.
Computational Description
CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 89.1 (TAIR:AT3G07770.1); Has 8908 Blast hits to 8859 proteins in 2447 species: Archae - 4; Bacteria - 3393; Metazoa - 2086; Fungi - 314; Plants - 461; Viruses - 0; Other Eukaryotes - 2650 (source: NCBI BLink).
Link
InterPro Scan - TAIR