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GT16886

CSHL Arabidopsis genetrap mutant lines

Original: GT16886

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16886

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2349403 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 612; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -5316; Region: intergenic
    Flanking Genome Sequence: GT16886 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGATCTTT GAGACCTACT 
    TATAATATCT TTCTCGGGAA TTATACCATT CGATTTGCAG CATCACATGA 
    TTAATTAATG CATAACTGGA CCGTCGTAAT AGAATCATTA ATTAAATACA 
    AGCAGGAATA ACTTTATTTT AATTATAATT AACGATGGAT ATAAATCGAA 
    GTTAATAAAA TCAAAGACAG TAAGGATTAG GTCAGTTGTG GATAGCAAAA 
    TCTGGTCTGA AAAAGAAAAA CCGAATATTC GCATAAAACC AAAAGAGAAA 
    AACAAATGTA GAAATATTAA TAAACCTTAT CTAGACCACG TGCTCCAATT 
    TTTGTTTATT CTCTCTCCTA AAGGCTTTTA TCAGGTGTGG TCGAAACTAG 
    ACGACAAACC CATGCACCTA GGCCTGGACC TGACTTGTTA CGCCAAGTCA 
    CATTCAATGC ACGCGAGAGA GAACTACGTT ACGTGTTACT TCCACGTCGA 
    CACATAACAA TTTGTATATA AAACATTATC CTCTACTTAA ANTCCTTCAC 
    GTCCATTTGA TCTGTCTTCT CAAGTTTTTA ACCTTTGGAT CTTACTCTTG 
    GATCATATCG AACGGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2349509 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 718; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -5210; Region: intergenic
    Flanking Genome Sequence: GT16886 - 5-prime edge 
    AACGAGTCAT TGCATACAGT TAGTCGGCAT TGAATCTCAT CTACTACAAA 
    ATGAAAAGAA TTTGTTTATT GACCTGGCTA GTCAAATTTC CAAACGTTGC 
    CGAGGCCTAT TTTTA

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.2

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR