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GT16888

CSHL Arabidopsis genetrap mutant lines

Original: GT16888

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16888

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1587644 [Map]; Strand: w
      • AT4G03565.1 - [+] show detail - Cystatin/monellin superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16888 - 3-prime edge 
    ACATAGGATA AGTCTTACAT TGTAATTTCT TCACAACCTT GGGTTGATAC 
    TCCACAAGCG TATCATCGTC CTCAGACTCT TTCGCCATAA AAGTAATATA 
    CGAAACCCAC CTACCAGTGA AAGACCCTGT CACTCTTACA ACATGATCCA 
    ATGTCACATT GGTTTCCTGA AAACACAACC AAAGGAAAAA TAAAAACAAG 
    TAATAACAAG GCCAATTCAC ACATCTTAAA CAAACAAAAC AATGTTAAAA 
    TCAGAAATTA CCTTTAAGGC ATTGTATTTG CGAAGACACA ATTTGACCAT 
    GTCTTGTGCG TATTGAAGTT GTGTCTTTCC TTTAACCGGA GAATGTTCAC 
    TGTCCAATGG TTCAAGTAAG ATTGCACCAA TCCATACGGA ACGTGGATGA 
    ATCCCTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28600440 [Map]; Strand: w
      • AT1G76230.1 - [+] show detail - unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; B...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16888 - 5-prime edge 
    TTGTCTTTCC ATCTTCGACA AAAGTTCTGA CTGGATCGAA TCTAGGGTTC 
    ATCTCACTC

AT1G76230.1

Model type
Protein coding
Computational Description
unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03565.1

Model type
Protein coding
Short Description
Cystatin/monellin superfamily protein
Computational Description
Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR