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GT16897

CSHL Arabidopsis genetrap mutant lines

Original: GT16897

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16897

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17820521 [Map]; Strand: w
      • AT4G37895.1 - [+] show detail - other RNA
        Distance: 5343; Region: intergenic
      • AT4G37900.1 - [+] show detail - Protein of unknown function (duplicated DUF1399)
        Distance: 1216; Region: intergenic
    Flanking Genome Sequence: GT16897 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTACAA GGTACCTCTA 
    TAGAATCAAT GGCTTCCATG GATTTTGAAA CTCTTTACTT CTAATAAACA 
    CCATTGTAAT GTCTTGTTGT GAAATTGTGT AAGGAACAAA GGATAGTGAA 
    AGCTGAAGAG TGGGCAGAGT TTATGGAGTT TCAGAGTTTT TTTTACTAAG 
    TGGCCTCTGT TTTTGATTCT TCAGTGGTCA ATTTTGTGAT GGGATTTGAT 
    TGAAATTGGA GAATGGTTTC ATGAAATCTC CTCTTCGGGC TGAGGTTGAT 
    TCATGACTCT TTCATTTTTC TAGTGTCTCA TTGATGATAG ACATAAGAAG 
    CACCATTGCT GAATCATATT GTTTGGCACA GTTCTAGTTG ACCATCCACA 
    AGTGGAATAG TTGGGATGAT AAAGAAGCTT GGAAACTAAA GATTCTCACT 
    TTCACTAGTG AATAATACAT TCATTTTTAA AAACGATTTT TGTTCTGTTG 
    TTTTATTTCT TTCTATAATA TTTTACAAGT TACCGAAGCT GAAGAAGAAT 
    GTTGTAACAA GTGAGGGTGT TTGAAACCAT AAAGCTGAAG AAGAATGGTG 
    TCTGAAACCA TAGAGGTTGT GTCTTGCTAG TTAACTTATA TATATAACAA 
    AGGCTGAAAC ATGAACTTTT GAAGATGATT CTACTCTGAA ACCATGAAGG 
    TTCAATCGGG TCTGATCAAG TGTTGAATTT TCTTGGTATT GTTCTCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17703485 [Map]; Strand: c
      • AT4G37682.1 - [+] show detail - Protein of unknown function (DUF1399)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16897 - 5-prime edge 
    CCTACTTTCT CCCTGCTTGA ATACTCCTCG AGTCCGCGTC CTCGAAATGA 
    AGATTTGAGC AGATGGGCTT TTGGAGGTTG GAATCAAAGG AAGCATCGGA 
    TTTGAGGGGG TTTTCGAACA TTCTCTTGGC TATTTCGAGT TGATTTCTCT 
    TCCAAGGTGG GGCGGCTCCA TTTTTGTTGT TACAGTGGCC GAGCTTTTTG 
    TTTTCACAGC GATGGGTTTA CATTGGTTTT GAAATTCAAA TTGATCTCGG 
    TTCGGTTTAA TTTGGTTTAG AGAAGAAAAC CAAAAAANTA CGACACGCGA 
    TGGGTTTTTG AGAATGAGGT GCGTGGATCC AAAAATGCAT GATTTTTGTG 
    GATTAACCCC TTTAGAAATC GTAGACACGC GCTCAACGCG ACATGAGTGA 
    GAGTGGCTGT GAAATAGCAC GATTGGTAAA AGTGGGGTAT GAAGTGGAGC 
    TCTCTCATTG GCTAAAAATA TAAAAAATAG TAGGGGAGCT CCTCCTCTCA 
    TATATTGAAA ACAATAACAA ACAGTGTATT TTAACCACTA CTAGTTATCT 
    TTAACTCTAT CTCATATCAA CAAACCGTTG TGATATCCTT GAGACACGTC 
    CTAACAACAA CTTACACATC AACCATTGAA CCCAGATGCA CTTCCTGCTG 
    TAACCTCA

AT4G37682.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1399)
Computational Description
Protein of unknown function (DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37895.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G37890
Link
InterPro Scan - TAIR

AT4G37900.1

Model type
Protein coding
Short Description
Protein of unknown function (duplicated DUF1399)
Computational Description
Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink).
Link
InterPro Scan - TAIR