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GT16904

CSHL Arabidopsis genetrap mutant lines

Original: GT16904

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16904

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16904 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAAGTAAGA 
    CCAACATTTT TTTTTTGGGG TAAAAACCCA AATTTTTTTT CCACCAAAAA 
    AAAAGAAGGG TTGGGAAAAG GGGCCAAACC CCCCGGGAAG GGAACCTGGC 
    TTGGGGCCTT TGTTGCTAAA AAAAACCAAA TTCCAATTGG GGCCTTTTAA 
    AACCAAAGAA ACCTCCATTT TTTTGGCGGG GTTTGGAACC CCATTCCTAC 
    CGGAAAATTT TTTAACCTTA TATTCCAAAT TGGCGGGGGG GGGGGGGTCT 
    TCCTGATTAA GGTGGGCCAA AGGGCCGTTA AAAATTTAAA ATTTTCCCGG 
    TAAAAAAGGT AAGGTAGGCC AAATTTTTTC CCAAATTTTT TTGGGGGGCC 
    CGGGGGAAAG AAAAAACCTT TTTATTGCCC GGGGGGGTTT GCCAAAACCA 
    AATATCCCCC GCCCCGGCAA AACCCTTACC CCGGTTTGGT AAATTACCAG 
    GTTCCCCCCT AAAAAGGTCC CGGGAACCCC CCCGCCAAAA GGCTTGGCCC 
    CCCGGGATTC CTCCTCCAAA AACCCATTAT TTCCCCGGCC CCCCCTTTCC 
    CGGAACCTCT TTAACCAAAC CGGTTTTTAA CCTTCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 438815 [Map]; Strand: c
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 3738; Region: intergenic
      • AT2G01950.1 - [+] show detail - BRI1-like 2
        Distance: 1821; Region: intergenic
    Flanking Genome Sequence: GT16904 - 5-prime edge 
    TCCTACTTTC TCCCTGGTCT TACTAAACAT AATTTGTTTC CAAATTTGTT 
    TTATAAGGAC CAAAATTTGT TTTGTAATTC AGGTCATAAA TGATGATATA 
    AACCGCACCT AAAACCGCAA TGCAACAGTG CTGTAATAAT ATCAAAATCT 
    ATATATAGAT ATATGTATTT ATGTATTTTC GTTATTATTT GAACCGCACC 
    GCATTTTTCC CGCACCGCAA AACGCAGTCA CCATTCATCT CACTCGA

AT2G01940.2

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.2); Has 5058 Blast hits to 4353 proteins in 195 species: Archae - 1; Bacteria - 0; Metazoa - 3999; Fungi - 151; Plants - 716; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01950.1

Model type
Protein coding
Short Description
BRI1-like 2
Curator Summary
Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.
Computational Description
BRI1-like 2 (BRL2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: BRI1 like (TAIR:AT1G55610.2); Has 216585 Blast hits to 138440 proteins in 4665 species: Archae - 155; Bacteria - 20149; Metazoa - 71991; Fungi - 10737; Plants - 87183; Viruses - 376; Other Eukaryotes - 25994 (source: NCBI BLink).
Link
InterPro Scan - TAIR