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Mutant Lines
GT16906

GT16906

CSHL Arabidopsis genetrap mutant lines

Original: GT16906

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16906

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 2356711 [Map]; Strand: w
- AT3G07360.2 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)
- AT3G07360.3 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)
- AT3G07360.1 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)

AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGATC 
CTAAAGATAT GAATAATTTA CAAAAATTCT TACAGCCAAA TAAAGTAAAA 
AAAAGAAACA AGATTTTAGG TAATTTACAT TGCAGATTTC AAGGCTTTTC 
TCAGGCTGTA TGAGTGAGAT TCATAGCTTT TCTCAGTCTG TCCAATATCC 
CATTTGCTTT CCTCTGCGCC CTTGAAGTTC CTTCACGCGA AAGCTTTGTT 
ATCGTTCCAT GAGCATTCTC CTCTTCTTTG ATCTCCTTCC ACTTTGTCCT 
GTCGCTGAAA CATATAGTAT GCAGTATCAC TATCGCATTC TCTTTGTTTC 
GCTTGCACTC GCTCTCTCGA GTTATCTTCA GCAACCATGA AACCCCACCG 
AGCTCACCCA ATTCCTCCAC AGCCTTCCAG TGAGTAACAA GCATTGCCAA 
TATAGCTAAA AGCTCATCAA CGTACAACCC ATTCGAGATT TTCTTACCTA 
AAACCCTAAC AGCTCCGTCT CTCACAGCTC TACTCCTGTT CTCATGGGCT 
ATACAAAGAG TGAAGATCGC TGCAGCTACG TCTTTGATAG CTAATGGATT 
CCCTTCTTCT AGGAGATCGA TAAGCGGTTT CAGGATTCCG GACTTCCCTA 
TAAGTACTTT GTTTGAATCG AGAGCTGACA GAGTGAAGAT CGCTGCAGCT 
GCATTGCTTC TCGTGGCGAC TGTTCCACGC CTCAATGCAT CGATAAGGAG 
AGGATCACAT TAGGATTTTC GCAGACGAGC TTCTTGTTGC TGTCATCATG 
TATTG

5 prime edge [+] show sequence

Chromosome: 3; Position: 2356760 [Map]; Strand: w
- AT3G07360.2 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)
- AT3G07360.3 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)
- AT3G07360.1 - [+] show detail - plant U-box 9
  Distance: 0; Region: exon2 (3UTR)

TTCCATCCTA CTTTCTCCCT GTTAGGATCT GAACGGTTAT TGGTTTTCGT 
ATGTGAGATG TAAGTAGAAA TCTGTGTGAA TAGTTTTTGC GTTTGATGTT 
TCTGGAGAAA TCAATCAATA AAATCAATGT TGGTGGCTTT ATTCAGCTGT 
GAAAGCCTTG GTCAACAAGT AACAGTGTGT AGCTTTTCGT CTGTTTCTGT 
GTATAAATAA GTAGATTATT AAAAATACAT AGAAAGGCTG TCATGTCGTG 
TTCCTCACAT CACTGATAAA CCACAAAGCA AATCAATCTA ATTCCTACTC 
TCTCTGGAAA AAGAGTTTAT TACAGAGTCA CGAGTTTTCC ATTGATGTGA 
TTTTTTCTCT ATGTAATGTA ACGTGACGAT GTGATTCCTA TTGTCGTGTT 
AGAAAAAAAC AGTACTTTTA AGTTTATTTA TATATAAATA AATACTCATC 
AAAGCTTATA AATAAATTTC GACTATCACT GATGAATTAT AAGTTTTGTT 
AGAAAACATA ACGGAGTAGT TTTGTAATAT ATTTCTAAAA AATGTTCTAG 
ACAAGGCAAG AAGCATGTAA GTAATGATAA AAATCACATG TATTTGGTTG 
GTTGGATTGC TTGGAAGTTA GAATTGAATC ACGAAATTGC TAAAACTCGT 
GATTCGTAAT AATTACAGGG TCAACATATC GGTGAGAAAG TTGAAAAAAT 
TGGAATAT

AT3G07360.1

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
Computational Description: plant U-box 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 3234 Blast hits to 3002 proteins in 224 species: Archae - 0; Bacteria - 16; Metazoa - 312; Fungi - 206; Plants - 2395; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G07360.2

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description: plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G07360.3

Model type: Protein coding
Short Description: plant U-box 9
Curator Summary: The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description: plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR