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GT16909

CSHL Arabidopsis genetrap mutant lines

Original: GT16909

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16909

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12045031 [Map]; Strand: w
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16909 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTTGTA 
    AAGGTTGAGA ACATTGGATG GAGTTGGGAA GTTATCTCCG AGGAGGCCGT 
    AGTTCAAGCC TATGCTATTT GCTGCGGCTA CGAAGCCACT AGTGTTATAG 
    TTGAAAGTCA GCATAATGCA CGAGAGGAAG AACAAGAACA GCTTCTTAGA 
    GGAATAGACC ATGATGAAAC TTTTGTCTGC AAAATATAGC AAAAGATCGT 
    ACTTGCTTGT AGAAGAGGAA GGAACAAAAT TTTGTTTCTT TATTTGTTTT 
    GTTACGTTGC AAAATATAGG TTGCAAATGT GTGTATATAT TTATATAGCT 
    ACATATCTGA GATCTATTTC CAGTATTATT CTATCAATAT AATAGTAAAA 
    TTCTTTTATT TTGGTTCTAT GTGTAATCTT AGCCGTCGAT GTATTTACAA 
    ATTTGTTTTT TTCTTTTTTC ACTAGGTTAT ATTTATCTAC ACTTTTTTTT 
    TTTTTTGAAA AAAGGGAAAA TTTTTTTTCC CCCAAACCTT TTTTAAAAAA 
    AAAACCCCCC GGGGGGGGGG GGTTTAAAAA AAAAACCGGG G

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12045093 [Map]; Strand: w
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16909 - 5-prime edge 
    CTTTCTCCCT GTTTCAAGTC CATAGGCATT ACAAAAATCC GAATCTTCGA 
    CCCAAAAACA GAGGTTCTTA ACGCCTTACG CGGCCACCGT AATATTGAAG 
    TCACTGTTGG CGTGAGGGAC CAGGACTTGG GTGCTCTTTC AGCTAACGAA 
    GAAGCTGTTA AGGGCTGGTT TGCAACCAAC ATCGAGCCTT ACTTAGCCGA 
    TGTCAACATT GCGTTCATTA CTGTTGGTAA TGAAGTCATC CCCGGACCAA 
    TCGGTCCTCA AGTGCTTCCG GTCATGCAGT CTCTTACCAT CCTCGTCAAG 
    TCGATGAACC TTCCCATCTC GATAAGCACC GTGGTGGCTA TGTCGAATCT 
    TGAGCAATCA TACCCACCTT CTGCTGGAGA GTTCACGTCT CAAGCGCGAG 
    AACAACTTGT CCCCGTGCTG AAACTATTGT CTCAAACAAG TACGCCTATT 
    CTCGTCAATA TTTACCCTTA CTTTCCTTAC GCATCCGACC CAACGAACAT 
    CCCTCTAGAC TATGCTACCT TCAACACTAA GGCCACCGTC GTCCAAGATG 
    GACCATTGGG CTATTCAAAC ATGTTTGATG CAATCTTTGA CGCATTCGTG 
    TGGGCAATGG AGAAGGAAGG CGTGAAAGAT TTACCCATGG TGGTGTCCGA 
    GACCGGATGG CCATCTGCCG GAAATGGGAA CTTAACCACA CCGGATATCG 
    CGGGTACTTA CAACAGAAAT TTCGTGAAAC ATATAGTAAG CGGGAAGGGA 
    ACGCCTAAGC GACCAACAAT GGAATGGATG GGTTTTTATT TGCAACGTTC 
    AACGAAAATC AAAAGCCGGC CGGGACTGAT ATGAAGCCCA TCTATAAGCT 
    ATTTTAAGTT TGA

AT1G33220.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2095 Blast hits to 2083 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2086; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR