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GT16925

CSHL Arabidopsis genetrap mutant lines

Original: GT16925

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16925

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18486638 [Map]; Strand: c
      • AT2G44820.1 - [+] show detail - unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; ...
        Distance: 828; Region: intergenic
      • AT2G44830.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -3491; Region: intergenic
    Flanking Genome Sequence: GT16925 - 3-prime edge 
    TTACCCACCG TTACCGACCG TTTTCATCCC TAACTATTAG TACATGTCTA 
    GTTGTCTACC TCAAAACTCG ATTACATACT GTGTAAAGTA GTTAATGACA 
    CTTACATACT AGTCACTAGA GAAGGTTAAG TCTTATATTC GAGCTTCTTT 
    GTATTCATCT CACTCGACAA AATCGAAATC CGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18830067 [Map]; Strand: w
      • AT1G50810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16925 - 5-prime edge 
    CCTACTTTCT CTCTGTCGAC ATGACAGGCA TGGCAAAAGA ATCATCAAGA 
    ATGTTTTCTT AGTGCCTGGT TTGGAGAAGA ACCTATTGAG CGTTCCTCAA 
    ATCATCTCAA GCGGCTATCG GGTACGTTTT CAAGACAAGA GATGCATCAT 
    CCAAGATGCA AATGGCAAGG AGATCATGAA CATAGAGATG ACGAACAAGA 
    GTTTCAAGAT CAAGTTAAGT TCTGTCGAAG AAGAAGCCAT GACAGCCAAT 
    GTTCAAACAG AGGAAACTTG GCACAAAAGA CTTGGCCATG TAAGCAACAA 
    GCGCTTGCAA CAAATGCAAG ACAAGGACTT GGTAAATGGG TTACCAAGAT 
    TCAAAGTGAC GAAGGAGGCA TGTAAAGCGT GTAATCTTGG GAAGCAATCA 
    CGCAAGAGCT TTCCAAAAGA ATCTCAAACG AAGACAAGAG AAAAGCTTGA 
    GATTGTGCAT ACGGATGTGT GCGGACCGAT GCAACACCAA TCGATCGATG 
    GAAGTCGCTA CTATGTGCTG TTTTTGGATG ATTATACTCA CATGTGTTGG 
    GTATACTTCC TAAAACAAAA GTCGGAGACG TTCGCAACGT TCAAGAAATT 
    CAAAGCGTTG GTGGAGAAAC AATCAAATTG TTCCATCAAA ACGTTGAGAT 
    CCGATGGAGG TGGTGAGTTC ACTTCACGAG AATTCAATCA GTTCTGTGAA 
    GATGAAGGAA TTAATAGGCA AGTGACTTTG CCTTACTCAC CCTCACAAAA 
    TGGTGCAGCA GAACGCAAGA ATAGATCATT GGTGGAGATG GCAAGATCAA 
    TGCTT

AT1G50810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT2G44820.1

Model type
Protein coding
Computational Description
unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44830.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 2 (TAIR:AT5G47750.1); Has 114332 Blast hits to 86906 proteins in 3497 species: Archae - 36; Bacteria - 13769; Metazoa - 45842; Fungi - 12821; Plants - 20261; Viruses - 350; Other Eukaryotes - 21253 (source: NCBI BLink).
Link
InterPro Scan - TAIR