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GT16926

CSHL Arabidopsis genetrap mutant lines

Original: GT16926

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16926

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18830025 [Map]; Strand: w
      • AT1G50810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16926 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATGAC GGTAATATCT 
    CCTTTACCGG CTGTCATGAC TATATCTCCA TTTCCGACTC TAATCGGGAC 
    TTTGATACTT TTGTTGATGT TTGAAAAGTA TCTCTCTTCT TTCGTCATAT 
    GGTTTGTGCA GCCACTGTCT ACCAACCAAA CATCTTCTTT TAACGTTGTT 
    GGTTCTTCTT CACTTGCACT AAACAACATA TGATCTTCAT TTACGTCTTC 
    TTCTTCAAGA CTTACATGAG CTCTCTCTTT GTCCNTNAAA CCTCGGAACA 
    AGGNGNNNNN CATGGCTATC CGTATGGGCA GAAAGGGTGG CGAGTTTATG 
    ATATAGAAAA AGGAATTTTT CCCGTTTCAC GGAATGTGAT CTTTCGTGAA 
    GATATCTTGG CTTACAGTGG TGAAGAAGGA TCATAGTTTT TGGTGGAAGA 
    AACTGACCCC TTTGTGAATG AATACCGATA TTAGCTCAGA TTTTGACAAC 
    AAACTCAACT CCCATACGAA ACCAACCTCA GAAATCAAAG AAGGTTTCAA 
    AGGAGAAGTC GACTCTTCCT CCAACTGAGA TAAGTGAAGC ACGTGATGTT 
    ATTGAACGTG ATGAAGTTGA AACACGTGAT GAAGTTGAAA CACGTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16809213 [Map]; Strand: w
      • AT3G45770.2 - [+] show detail - Polyketide synthase, enoylreductase family protein
        Distance: -1418; Region: intergenic
      • AT3G45775.1 - [+] show detail - transposable element gene
        Distance: 219; Region: intergenic
    Flanking Genome Sequence: GT16926 - 5-prime edge 
    CTTTCTCCCT ACATCAACTT CTACCCGTCC ATTTTGTTGC AGTGTTCCGA 
    CACATGAGGT TTCATGACTA AAGGATTTCA GAGATCAAAT AGATTCGTGT 
    TATTGATGAC AATGAACAAC ATACAACATA TATAGAGTCG ATGTACAACC 
    GAAAGAGAGA ATCTAGGAAG ATCTATCTAG TTCTAGTTAC AAAGAATATA 
    TGCATCTGTT AGAGTATATT CGTAGATGAT TATGCGAAGA GTAACTAAAG 
    AGAACCGAGC CAAACCGGCC CCTAATACCC TCCCTCAAGC TGGAGAATAC 
    AGATTTCGTG TTCCCAGCTT GGACTTGAAG TAACGAAAAC CATCCTTTCC 
    AATTGCCTTT GTTAAGATGT CAGCGAGCTG TGAACGTGAA TCAACATGAT 
    ACAGCTGAAT TTCTCTCTTC AAAACCTCAT CTATGACAAA ATGGAGATCA 
    ATTTCGATAT GTTTTGTACT TTCATGGAAG ACTGGATTTG TTGCAATGTA 
    AATAGCAGAT TTACTATCAC ATTGCACCAC CATTGGTTGT TTATGAACCA 
    CACCAAGTGT CTTCAGCAGT TTTTATCCAG ATAAGCTCCT GAACCAGTTT 
    AGCTATCGCC CTATACTCTG CTTCAGCGGA TGAAAGACGA ACTGTTTTCT 
    GCTTCTTCGT TTTCCACGAT ATTGGAGAGT CTCCTAACTG CACAAAGTAA 
    CCAGTGACTG ACCGACGCGT TAGAGGACAG CTATCCCAAT CTGCATCACA 
    CCAGCCGGTG ACTTGAATAT TAGAATCAGC CCGCAACAAT ATTCCTTGGC 
    CAGGATCAGA TTTCAAATAT CTGATAAGAC GCAACGCAGC TAGCCAATGA 
    TC

AT1G50810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT3G45770.2

Model type
Protein coding
Short Description
Polyketide synthase, enoylreductase family protein
Computational Description
Polyketide synthase, enoylreductase family protein; FUNCTIONS IN: copper ion binding, zinc ion binding, ATP binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ARP protein (REF) (TAIR:AT1G49670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45775.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR