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GT16948

CSHL Arabidopsis genetrap mutant lines

Original: GT16948

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16948

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23444517 [Map]; Strand: w
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -511; Region: promoter
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -511; Region: promoter
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16948 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCTCC 
    AGGTCCTCCT CCGTGTCGAG GTCAGCCTCA GCGGCCACGG CGGAGACAAT
    AAACTTGTGG TTGGAAGCTC TGTCAATAGC AGCACATCTC CGGTCCCTGG
    AACCCCCAAG GAGAAGAAGC GGGACGCTCA AGTGGTTGGG TCTGGAGCTG
    GCAAAAGAGA AAAGAGATGG AGTAGGGGTA AGGTCCTGGG CACGAGTGGA
    TGCGGCGGCG TATGCTAGCA TGAGAGAGGA GTGAGTAGCG CAAGCAGCCA
    TTGTTGGAGC TCTCTTTCTT TCTGGGTACA AAGAAGAAGA AGAAGAGTGC
    GAGTCTCCCT AATCCACTCC ACGCCCAAGG GGATAACAAC ACCCCCTATT
    CTTTCTGAGC TATTATTCTC TGCGTGGCGG GCACCTTAGC TACCGTGTTC
    CTAGTGACAC GTGTCTTCTT ATGGACCATT AGATCTTTTA ACAACCCACA
    CGCGTATCCT CCTGACCTCT TCTCCTTCTC CTTCTTCTTC TTCCTTCTCT
    TTTCTCAAAA ATCAGATTTC GAGTTTCTTC TTTCCCGCCC GTAAGAGAAA
    CCCTACTCTG ACTCTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23444577 [Map]; Strand: w
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -571; Region: promoter
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -571; Region: promoter
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16948 - 5-prime edge
    CTTTCTCCCT GCCTGGAGCA GACCGCCACC GCCGTCCTTG ATCCGCCCAA 
    GCCTAAGAAA GGAAAAGCCG CTTTGGTTCT CAAGAGAGAT AGAGTATGTG
    CTTTACCTAC TTCAATTTCG CTTCCTTTAC TCGTGAATCA TCACTTTGTT
    TGCTTACCCA TTGACAGACA AGGTCTAAGA GGTTTTTGGA AATCCAAAAG
    CTAAGGGAAA CCAAAAAGGA GTATGATGTC AACACTGCTA TCTCTTTGCT
    TAAACAAACT GCCAACACAA GGTTTGTTGA GTCTGTTGAA GCCCATTTCC
    GTCTCAACAT CGATCCTAAG TACAATGACC AGCAGCTGCG TGCAACGGTC
    TGCTTTGCCT TTTGCTGGAT ATACACTCTA TCTTGTGCTG CTTCATTCCA
    CAACATTTTT TAATCTCAAT GCATTGTCTT TTTGTATAGG TGAGCCTGCC
    TAAGGGAACT GGCCAGACTG TTATAGTCGC TGTTCTTGCA CAAGGTATAT
    TGCCCCACCA AATTCACTGC TAGGACTTAG GACAGAGATT ATGCTTTACC
    ATTTCAGTCA CCAAATTCAC TGTTAGGACT TAGGACAGAG ATAATGTTTA
    CGGTATCAGT CAGTCAGTCA GTACTTCTCT AGATGCAACA TTGTTTGGTG
    CGATTGACTT TTTATTTATA TATTGATTGG ATGGAGTTCT TGTGTATCAT
    GTGGCTTATT CTTTCTAAAT CTTTGGCTTG CACCATTTCC ATGCTGAACT
    TCCAGGTGAG AAGGTTGATG AAGCCAAAAG TGCAGGGGCA GATATTGTGG
    GCAGTGATGA TTTAATCGAA CAGATTAAAG GAGGC

AT3G63480.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63480.2

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.2

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR