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GT16948

CSHL Arabidopsis genetrap mutant lines

Original: GT16948

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16948

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23444517 [Map]; Strand: w
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -511; Region: promoter
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -511; Region: promoter
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16948 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCTCC 
    AGGTCCTCCT CCGTGTCGAG GTCAGCCTCA GCGGCCACGG CGGAGACAAT 
    AAACTTGTGG TTGGAAGCTC TGTCAATAGC AGCACATCTC CGGTCCCTGG 
    AACCCCCAAG GAGAAGAAGC GGGACGCTCA AGTGGTTGGG TCTGGAGCTG 
    GCAAAAGAGA AAAGAGATGG AGTAGGGGTA AGGTCCTGGG CACGAGTGGA 
    TGCGGCGGCG TATGCTAGCA TGAGAGAGGA GTGAGTAGCG CAAGCAGCCA 
    TTGTTGGAGC TCTCTTTCTT TCTGGGTACA AAGAAGAAGA AGAAGAGTGC 
    GAGTCTCCCT AATCCACTCC ACGCCCAAGG GGATAACAAC ACCCCCTATT 
    CTTTCTGAGC TATTATTCTC TGCGTGGCGG GCACCTTAGC TACCGTGTTC 
    CTAGTGACAC GTGTCTTCTT ATGGACCATT AGATCTTTTA ACAACCCACA 
    CGCGTATCCT CCTGACCTCT TCTCCTTCTC CTTCTTCTTC TTCCTTCTCT 
    TTTCTCAAAA ATCAGATTTC GAGTTTCTTC TTTCCCGCCC GTAAGAGAAA 
    CCCTACTCTG ACTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23444577 [Map]; Strand: w
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -571; Region: promoter
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: -571; Region: promoter
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16948 - 5-prime edge 
    CTTTCTCCCT GCCTGGAGCA GACCGCCACC GCCGTCCTTG ATCCGCCCAA 
    GCCTAAGAAA GGAAAAGCCG CTTTGGTTCT CAAGAGAGAT AGAGTATGTG 
    CTTTACCTAC TTCAATTTCG CTTCCTTTAC TCGTGAATCA TCACTTTGTT 
    TGCTTACCCA TTGACAGACA AGGTCTAAGA GGTTTTTGGA AATCCAAAAG 
    CTAAGGGAAA CCAAAAAGGA GTATGATGTC AACACTGCTA TCTCTTTGCT 
    TAAACAAACT GCCAACACAA GGTTTGTTGA GTCTGTTGAA GCCCATTTCC 
    GTCTCAACAT CGATCCTAAG TACAATGACC AGCAGCTGCG TGCAACGGTC 
    TGCTTTGCCT TTTGCTGGAT ATACACTCTA TCTTGTGCTG CTTCATTCCA 
    CAACATTTTT TAATCTCAAT GCATTGTCTT TTTGTATAGG TGAGCCTGCC 
    TAAGGGAACT GGCCAGACTG TTATAGTCGC TGTTCTTGCA CAAGGTATAT 
    TGCCCCACCA AATTCACTGC TAGGACTTAG GACAGAGATT ATGCTTTACC 
    ATTTCAGTCA CCAAATTCAC TGTTAGGACT TAGGACAGAG ATAATGTTTA 
    CGGTATCAGT CAGTCAGTCA GTACTTCTCT AGATGCAACA TTGTTTGGTG 
    CGATTGACTT TTTATTTATA TATTGATTGG ATGGAGTTCT TGTGTATCAT 
    GTGGCTTATT CTTTCTAAAT CTTTGGCTTG CACCATTTCC ATGCTGAACT 
    TCCAGGTGAG AAGGTTGATG AAGCCAAAAG TGCAGGGGCA GATATTGTGG 
    GCAGTGATGA TTTAATCGAA CAGATTAAAG GAGGC

AT3G63480.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63480.2

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.2

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR