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GT16952

CSHL Arabidopsis genetrap mutant lines

Original: GT16952

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16952

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185972 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1458; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4571; Region: intergenic
    2. Chromosome: 5; Position: 11186474 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1960; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4069; Region: intergenic
    Flanking Genome Sequence: GT16952 - 5-prime edge 
    TCCTACTTTC TCTCTCTCGA CTAGGGCTTT CCGAAAAGGT ATCACGTGCC 
    AAGTTTGGCC TCACGGTCTA AAAGTTATGG AGTCATAAAG TTTTAACCAA 
    AACAAAAAAG GTTAAACATA AAAGAGGGAT GCAACACGAG GACTTCCCGG 
    GAGGTCACCC ATCCTAGTAC TACTCTCGCC CAAGCACGTT TGACTGCGGA 
    GTTCTGATGG GATCCGGTGC ATTAGTGCTG GTATGATCGC ATCCGTTAGT 
    ATATGCAATG CAATCGTATA TATTCTTTTT TGAAGACTTG ATGAACCATT 
    CGCCGTGGGT CCCACCCGCT ATGTAGGGAT ACCCCATCTA GTCTTAACGA 
    GCTTTGATGC ATGAAAAAAT TCGAAAACAA TGCTTGAACA AGTAATTTTG 
    GGTCCGTAAT ATAGCCCAAA TCACGAAAAT GCCCGAAAAA GTACTTAAAG 
    GTCAAAATTT GGGGTCGACA AAAAGTCAAT GGAAAGCTTC CATTGTCCTG 
    CTTCTTTCGT CGGAGGGCTG TCTTTGGGCT TTCCGAAAAG GTATCACATG 
    CCAAGCTGGG CCTCACGGGC TAAAAGTTAT GGA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR