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GT16954

CSHL Arabidopsis genetrap mutant lines

Original: GT16954

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16954

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19679728 [Map]; Strand: w
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: -2; Region: promoter
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: -2; Region: promoter
    Flanking Genome Sequence: GT16954 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCACTAGCTC 
    AATTGAAAAA TGTCTCAAAG AAATCTGAAA AATGTTGGCT TCATTTCCTT 
    TCATAATCTA ATGTTGTTTC CCCAGTCAGT GTCTGTGACA CATAGCGAAT 
    CATGTTGCTC TAAATAATAA ATATAATATA CAATATAGAC AAACAAAAAA 
    AAAAAAGGGG GGGTTTTTTC CGGGAAAAAA AGGGATCTGG ACCCCCGTTT 
    AAATTACCCA AAAAAAAAAA TTTAAAAAAC CCCAACCTAA TGTTAAGGGG 
    AAGTCCCCCA AAAGGGTTTT GGAGCTGCCC CCTTTGCCCC AAGGCCCCCG 
    GCCAAAAAAA AACCCAAACC CAAGTTTTGG CCGTCCCCCG GCCCAAAAAT 
    TTTGCTAAAC CCTTTTAATA TTTAAAAATC CCCCTTTAGC CCCCAAGCGG 
    GGGGGATTTG CCCCATAGGG TTCAAAAAAC CTGTCCCAAA AATTTGCCAT 
    GGCCCCCAAA CAAACCCCAG GAAATTTTTC CCTTCCAGGG GCCCCCCCAA 
    AAACCCCAAA GGGCCCCCCA AAACCCTTGG CCAAATTTTT TATGCCGGAA 
    AAAAGGAGCC CCCCCCCCGG GAAAAAGCCC TTTTCAGGAT TGCAAAAAGG 
    GTAAAAAAAA ACCCCTTTAA AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19679789 [Map]; Strand: w
      • AT2G48120.1 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48120.2 - [+] show detail - pale cress protein (PAC)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT16954 - 5-prime edge 
    CCTACTTTCT CCCGAGCTAC AAGTACTAAG CTACACCACG GGGTTTAATT 
    TGTGAAATCC GAAACTAGGG AGACTAAATC CGAATAGATA TAGATAGCCT 
    AAGGGATTCG GGGCTGCAAC AAAATCACTC CCACTCACTG CGAAGCTCGA 
    CTATGGCGGC GACGTCGCTG GTTCTGACGT GCGCATCCCC TCTATTCAGC 
    AGCCCTCGGG TTATTTCTGC TACGAAGAAG CTGACTACAG AGTTGTCGAT 
    TTCTACAGGT CAGTTTCGCG GGGTTTAATT TGTGAAATCC AAAATTAGTT 
    TGTTTCATCT AAAATGATCC TCTGCCGATG TCTCAGCTAA ATTCCGAAGA 
    AGATGCTCGG GAAACAATGA TGAAGTGCTT CTAGAAGGAA TGCCACCGGA 
    GTATTACGAT GATGT

AT2G48120.1

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 504 Blast hits to 478 proteins in 108 species: Archae - 0; Bacteria - 11; Metazoa - 283; Fungi - 39; Plants - 50; Viruses - 8; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48120.2

Model type
Protein coding
Short Description
pale cress protein (PAC)
Curator Summary
The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.
Computational Description
PALE CRESS (PAC); Has 299 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 13; Metazoa - 176; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR