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GT16959

CSHL Arabidopsis genetrap mutant lines

Original: GT16959

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16959

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28600086 [Map]; Strand: w
      • AT1G76230.1 - [+] show detail - unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; B...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16959 - 3-prime edge 
    CACCACGTTA TTTGATGATG ACTGGCTTTT TGGTAACCAT CTTCATAAGA 
    ATGCTGTTAC CACTAATACA GCCGCTGTCA AGATCGATGC AGACATGATC 
    ATGAAGTTGC TGCAGAGATC ATGAGGAGAT TCCTTGTTTC CTAGCGAAAG 
    CCCAGTTTTC GCCATCAATT CGGAATATTT GTATAACCAT ATACAGTTCC 
    GTTCTAACTG TCTCTGTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4803516 [Map]; Strand: w
      • AT3G14380.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16959 - 5-prime edge 
    TTTTCCTCCT ACTTTCTCTC TGGCGAGAGC CGAGAGAAGA GAAAAGCAGC 
    ACAAACGCCA TTAGCACTCA CCAAATACCT ACAATAAGGG AAAAAAAAAG 
    GAAAGGTTAT GATTGATTAC GCTCTAATGA AGCAAGAAGA GAAAGAGAGA 
    GATAGAAGAA GGTGAACATG AAAGCTCCAA GATTTGAGTA AGAAACAGAG 
    CCAAATTCGT TGGAGATAGA GTTCTTGATC ATGATGACGA GACCCGTAAT 
    ACTTAGAGCC ATTGATGCTA CTCGCAGGAC CGCCTCTGCC GATTTCTCAG 
    GGCGATTAAG CACTAAAGCT GATTCGTCAA TGGCGGTTTG ATCAGTCTTG 
    TCCATCTTTT TTTTTGGGGG TTAAGGGAAA AAAAAACTTT GGCTTTGGCT 
    TTTAAAAGGG TAAGGGGTTA AAGGCATAAA AGAAAAAAAA GGCCCTCAAG 
    GATTCAAAAA AAACCGGGGG TTAAAGGGCG GCCCCCGGCC CAATTTTAGG 
    GGACCCTTTT TCCCCATTTT AAACATTTTT TTTTCCAAAT TTGGGATTCC 
    CGCCCCAAAA AAAAAAAGGT TTGAAATGGG ATTAGGCCCT CCAAAAAAAA 
    GAAAAAGGGG GGCGGGTTAT TCATTTAAGA ATTTCGGGGA GGGACTATTT 
    TCCCCCAACC CTTGGTAAAA AAATTCCTTC CCCTGAAGGG GCTAAAACTT 
    TTTG

AT1G76230.1

Model type
Protein coding
Computational Description
unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14380.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G17200.1); Has 637 Blast hits to 637 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR