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GT16970

CSHL Arabidopsis genetrap mutant lines

Original: GT16970

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16970

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28600217 [Map]; Strand: w
      • AT1G76230.1 - [+] show detail - unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; B...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16970 - 3-prime edge
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG 
    CAGTAAGAAG ACGATAAGGG AAGATGCAAT TTGTGAATCA AAGAATAGAA
    AGAAGTATAA GCCAAGCAAC GAATCTGGAT TCAACACGTT ATTTGATGAT
    GACTGGCTTT TTGGTAACAA TCAGCAAAAG AATGTTGTTA CCACTAATAA
    AGCCGCTATC AAGAACGATG CAGAGATGAT CATGAAGTTG CTGCAGAGAT
    CATGTGGAGA TTCCTTGTTT CCTAGCTAAG GCCCAGTTTT CGCCTCAATT
    CGGAATATTT GTATTACCAT ATACAGTTCC GTTCTAACTG TCTCTGTATT
    GTTTCTTTCN NCCCTCGATC AGGATTTAGC CTTAGCCTGT GATCTATTCG
    GGTATGTATA TTTCATATCC TATCATGAAT ATCTCTGTTA ACTCGTAATC
    TGTATAATTT TTTGTCGTAC AAGAGTTTCC TTTTTGTAGA TTTCCTTTTC
    CTTGTAGTAT TGGTTATCTA CTTATCTTGT AGTCTCATA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6722917 [Map]; Strand: w
      • AT1G19420.1 - [+] show detail - pseudogene, CHP-rich zinc finger protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16970 - 5-prime edge
    CCTACTTTCT CCCTGCTTAC TGCTATGACT AGTGTTGAGG GAAGAATTGG 
    ACAAGTCTCA ATTCTGGCCC AAAAGGAGTT AACAGCCCGA TTTCGATTTA
    TAAGTCAAAG CCCAATCTGT TGAAAATGAA TGTTCTGGAG AAAGGACAGA
    TCATCACATT AAGCAGAGGG AATTGGCCGG ATTACCCTCG TCGTACGCCC
    TAAACAAGCG GCTATAAATA AAGAATGGAA AGAAACGTTG ATGGGACGGG
    AAAAGGGGCT CTAATACAAC GACAGTACGA CTACAAGTGA AGAAAAGGTT
    GTTGACGCCC TCGTTCGACG AGCTGAACCC TGGAGGAAAG ATCGCCCCGA
    CCTCAAAACC GTTGACGCCC TCGTTCGACG AGCTGAATAC TCGAGGAAGG
    ATCACCCCGA CCTCAAGATC GCCACTCCCA CTCTTCCCCG TTCCGAAATC
    GTCTTAACGA ACCTGACGTT GCAAACAAAT CCAAGTCAAA GGCCTAAGCA
    GAATGTTAAG TCAAGAGGGT AGGCTCGTCA AAACCCTGGA GGAGTGCCCT
    ACACGCAGAA GCCTATAAAT ACAGAATAGC ATGTCTTGTC AAAAAGGGGG
    ATTCGGCGAG GACACTTAGA GACAAAGAGC AGCTCGTCAG CTCACCCGTC
    TGAAGCATCT CGTCAGCCGG TCCGTCTCAA GTAGCTCGTT AGCTCACCCG
    TCCGAAGTAT CTCGCCAGTC GGCCCGTCTC AAGTAGCTCG CCCTTCTAAA
    GTAGCTCGTC AGCTCTCCCT TCTCAAGTAG CTCGTCAGTT CGTCCGTCTC
    AAGTAGCTCG TCAGCTCTCC CTTCTCAAAG TAACTCGTTA GCTCGCTCCT
    CTTCGCAAGC TTA

AT1G19420.1

Model type
Pseudogene
Computational Description
pseudogene, CHP-rich zinc finger protein
Link
InterPro Scan - TAIR

AT1G76230.1

Model type
Protein coding
Computational Description
unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR