1. Home
  2. Mutant Lines
  3. GT16971

GT16971

CSHL Arabidopsis genetrap mutant lines

Original: GT16971

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16971

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 619230 [Map]; Strand: w
      • AT2G02350.1 - [+] show detail - SKP1 interacting partner 3
        Distance: -139; Region: promoter
    Flanking Genome Sequence: GT16971 - 3-prime edge 
    ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACGGG 
    AAGTAGACGC GCTCATTCTT CTCACACGAC GAATAGTTTC GTAAATTAGG 
    AGAACGAAAT AAGAAGAGAA GAGTCTCAGA AGTCAGAATT CTCTCAATAG 
    ATTCGACGGA GACGATGATA CGGCTACGGA CACTGATTGA GAAAAATCGA 
    AACGAAAGCA GAAAAAAGAT CGTCTCTTCT TCTCTCGCGA CGAAGCCTGA 
    GGGATGCATT TCAAACATAA TCTCTTTCAC AAGTCCTGAA GACGCTTGCG 
    TCGCTGCTGC GGTTTCGAAG ATCTTCGAAT CGGCGGTGAA ATCAGATATC 
    GTATGGGAGA AGTTTCTTCC GGCGGATTAC GAATCTCTGA TTCCTCCGTT 
    GCGAGCGTTC TCATCGAAGA AGGAACTCTA TTTCTCTCTC TGCAGCGATC 
    CTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6722932 [Map]; Strand: w
      • AT1G19420.1 - [+] show detail - pseudogene, CHP-rich zinc finger protein
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16971 - 5-prime edge 
    CTTACTGCTA TGACTAGTGT TGAGGGCAGA ATTGGACAAG TCTCATATTC 
    TGGCCCAAAA GGAGTTAACA GCCCGATTTC GATTTATAAG TCAAAGCCCA 
    ATCTGTTGAA AATGAATGTT CTGGAGAAAG GACAGATCAT CACATTAAGC 
    AGAGGGAATT GGCCGGATTA CCCTCGTCGT ACGCCCTAAA CAAGCGGCTA 
    TAAATAAAGA ATGGAAAGAA ACGTTGATGG GACGGGAAAA GGGGCTCTAA 
    TACAACGACA GTACGACTAC AAGTGAAGAA AAGGTTGTTG ACGCCCTCGT 
    TCGACGAGCT GAACCCTGGA GGAAAGATCG CCCCGACCTC AAAACCGTTG 
    ACGCCCTCGT TCGACGAGCT GAATACTCGA GGAAGGATCA CCCCGACCTC 
    AAGATCGCCA CTCCCACTCT TCCCCGTTCC GAAATCGTCT TAACGAACCT 
    GACGTTGCAA ACAAATCCAA GTCAAAGGCC TAAGCAGAAT GTTAAGTCAA 
    GAGGGTAGGC T

AT1G19420.1

Model type
Pseudogene
Computational Description
pseudogene, CHP-rich zinc finger protein
Link
InterPro Scan - TAIR

AT2G02350.1

Model type
Protein coding
Short Description
SKP1 interacting partner 3
Curator Summary
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Computational Description
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR