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GT16979

CSHL Arabidopsis genetrap mutant lines

Original: GT16979

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16979

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3101544 [Map]; Strand: w
      • AT1G09570.2 - [+] show detail - phytochrome A
        Distance: -1187; Region: intergenic
      • AT1G09575.1 - [+] show detail - Protein of unknown function (DUF607)
        Distance: 127; Region: intergenic
    Flanking Genome Sequence: GT16979 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC ATTATGAACA GTTGTTTTGA 
    GAGTTCAATA TCAAAAGAGT GAAAATGAAA TAGCTCTCAA AGGGCGCCTT 
    AAAGTTCCAA ACCATCACAT CCCTAGTGAT TGAAGCGTTC TTGGCCGGCC 
    ATTAAGAAGT CTCCTAAGCT CATATTTGTT TTGTTCCTCA AAGTGTTATT 
    CCTAGAATGG GATTAGTACC TTTTGCCAAT TCAGATATGT GCAACATGGG 
    CCATGACTAT GTCTAATGGA TGATACTGTG TTGCTAGGAC AACATTTGCA 
    TTATGGAGGC ACATTATTGG TCCAACATAG CTGTGCCACA ATATCTATGC 
    TGAATTGCGC TGTCTAGATA AGACGTTGTC GATTCGATCT TCTCCGGAGA 
    TTTACTGCAA AAAACTTAGG GGGAGATTTA ACTTTAAGAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3101614 [Map]; Strand: w
      • AT1G09570.2 - [+] show detail - phytochrome A
        Distance: -1257; Region: intergenic
      • AT1G09575.1 - [+] show detail - Protein of unknown function (DUF607)
        Distance: 57; Region: intergenic
    Flanking Genome Sequence: GT16979 - 5-prime edge 
    CCTACTTTCT CCCTGTGTTC TTACCATGTG TTTTCTCGGT TTTTAATGTG 
    TGTATTTGTG TGAAACAAGG CCAATAATCT ATATACGAAA ATAAAGAAAA 
    TGGTTCTTTA CACCAAAACT TCCGTATTAA AAAAAACATT TAAAATCTGT 
    TATCGTCACT GTAATAAACA ATGTCAATGG TTACTTATGT ATAAGAAGTA 
    GAAGAAGATG ACGGAAAACA ATCTTTGTCA CTCTTTTGCA AGGACTGATC 
    ATCTTCTTCT TCAGTTTGAT GAACCACCGG AGGACATGAA GAAAGTTTTT 
    CATAATAATC AGTCCCTGCG ACTCTGCAAA GCATCCTCGA GATCAAGTTC 
    TAATCCAACA CGATTCCTTA TAGACGCAGC TGCATGACAA GACGACGTCA 
    TTTTAAATAA CCTCTCCAAT TCCTTAAACC TCTCGCAGTC AAACTTATGA 
    CTCTTCAACA ACT

AT1G09570.2

Model type
Protein coding
Short Description
phytochrome A
Curator Summary
Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.
Computational Description
phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09575.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF607)
Computational Description
Protein of unknown function (DUF607); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT1G57610.2); Has 384 Blast hits to 384 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 56; Plants - 127; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR