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Mutant Lines
GT16990

GT16990

CSHL Arabidopsis genetrap mutant lines

Original: GT16990

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16990

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 82837 [Map]; Strand: c
- AT4G00190.1 - [+] show detail - pectin methylesterase 38
  Distance: -797; Region: promoter
- AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
  Distance: 0; Region: exon6 (CDS)

AACGGTAGAG GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGCTG 
CAGGGGCATG CTCGACTCTT TGCTTCCTCG GTTTCTGATG ATCTTGTTGA 
TCACTCGTTA TAAAACTGCC AACAACAACC TGTGTTTAAG AAACAACAAA 
ACTTGATGAG ATGAGAGACG ATTTCAAGAA ATAACGTAAA CGTTGTTGTT 
AGATTCATGA GTCACCTGAA TAGGAGTGGC GGCAATGAGC AGGCCAGCGA 
CACCGCCACC GACAACACGA CCATCAGGAC CGGCCAAAGA TACACTCATG 
CCACCAGACC GACCTTTTGA ACCTTGATTC TCTGTTTCCA TGAATGAACC 
AGACAGAGAC AGTATCTCAA ACCGACCCTG CAAGAAACCA ACACATTATA 
ATATGACACT TTCACTTTCT CTCTGATAGC TTTAAATGGA GTGTGAGAGA 
CAAACCTCGT AGGTGAGAGT ACCACCGCAA GAATCGGGTT GGCGAAGAGT 
AACGTTTGAT ATCACTCCAT TTGCTGATAA GATACAAATA GCTCGTGGTC 
CTTGTTT

AT4G00190.1

Model type: Protein coding
Short Description: pectin methylesterase 38
Computational Description: pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00200.1

Model type: Protein coding
Short Description: AT hook motif DNA-binding family protein
Computational Description: AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR