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GT16992

CSHL Arabidopsis genetrap mutant lines

Original: GT16992

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16992

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13413859 [Map]; Strand: c
      • AT4G26580.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -830; Region: promoter
      • AT4G26580.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -681; Region: promoter
      • AT4G26582.1 - [+] show detail
        Distance: 0; Region: intron1 (NonCoding)
    Flanking Genome Sequence: GT16992 - 5-prime edge 
    TCCTACTTTC TCCCTGATGT CAAGGCTAAA AGTTTCCATC TTTTTCTAAT 
    TGAATAACAC TAAGATCTGT GAACAACTTC CGTTCCTGTC AATTTCAAGC 
    AATCAAGAAC CAAATTTGTC ACCTTCTATT GAACTCAGGA AAACTCCTAA 
    ATTGTGCAAT TTAACGTACA TGTCAAACGT AATCAGATCC TAAGATTCAT 
    AGTTAGGTTT TTCAAACCTT CGAAGTCATC ATGAGAGAGA TCTCCAGAGG 
    AGGCAGGAGA TGGAGGACAA GCTTGATGTA CTCATTATGG GAGAGCTCAA 
    ACTTGAGCTA GTAGAGCTAC GCCATTATTT CCCAAGCTCA CCTTTGTTTG 
    ACTCGATCAC AAAACTCAGT GAGTCAGACT CAGTTCAACG ACCCTCTAAT 
    TTGGATACCC GTTTACGCGG CCCAACCCGG CCCAATACTG GATTTTGAAT 
    TTTTTTATGT TTAATGATTT TCTTATAAAT ATTTGGCTTT GCGTAAAGGG 
    AGAGAGGGAG GAGAGATGGC GTTGTCTAAC CAAAAAAAAA CCGAGAATGG 
    TTAAGGCACC ACCGGGTTGT TGTCGAATTT TTGCTTCAAA AACAAAAAAC 
    TAAGGTTGTT AGGTTTTATA GGCCAACGGT TAAGGTTCTC CAACTTCTCG 
    GCTTCTTCGG AATTCTTCAA TCCTAAGCAA AAATCCATTG GGGGACGTCA 
    TTATCAAAGG GCCAATTT

AT4G26580.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G55970.2); Has 9396 Blast hits to 9372 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 691; Plants - 4936; Viruses - 28; Other Eukaryotes - 1352 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26580.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G55970.2).
Link
InterPro Scan - TAIR

AT4G26582.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26590
Link
InterPro Scan - TAIR