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GT17011

CSHL Arabidopsis genetrap mutant lines

Original: GT17011

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17011

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10427667 [Map]; Strand: c
      • AT4G19030.1 - [+] show detail - NOD26-like major intrinsic protein 1
        Distance: -4180; Region: intergenic
      • AT4G19035.1 - [+] show detail - low-molecular-weight cysteine-rich 7
        Distance: 140; Region: intergenic
    Flanking Genome Sequence: GT17011 - 5-prime edge 
    TGGTTTATCG TGTGCTAGAC ATTTTAGCAA TCTACGTTTA AGTCACAACG 
    CGTTTTAGAA ACCCGGTATG TTTTGATATA ACATAATAAT TAAAGCCGGT 
    TTTATACGGG TTTAGACTAC ATACATCTTT ACTACTAACT AACAAGTCTT 
    ATAATGCAAT ATTTGGAATT AAAACATAAC CCTGATTCCA TGTTCTTACT 
    TATATTAGAC CACCTTTAAA GTCTCTTTTT GAGAATGCTC TCATCTATAT 
    ATTTTTTGAT GAACACAAGT TTGTTTATCT GCTTCTCTTT GGGTCCCCAT 
    TATTTT

AT4G19030.1

Model type
Protein coding
Short Description
NOD26-like major intrinsic protein 1
Curator Summary
an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.
Computational Description
NOD26-like major intrinsic protein 1 (NLM1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 1;2 (TAIR:AT4G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19035.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 7
Curator Summary
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational Description
low-molecular-weight cysteine-rich 7 (LCR7); CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 15 (TAIR:AT4G19038.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR