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GT17012

CSHL Arabidopsis genetrap mutant lines

Original: GT17012

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17012

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23080499 [Map]; Strand: c
      • AT3G62360.1 - [+] show detail - Carbohydrate-binding-like fold
        Distance: 0; Region: exon1 (5UTR)
      • AT3G62370.1 - [+] show detail - heme binding
        Distance: -260; Region: promoter
    Flanking Genome Sequence: GT17012 - 5-prime edge 
    CGGAGTCATC AGTCCGATAT CTTGGATCCG TGCTCCATTG ACGAACAACA 
    ATCATTCTTC TTTTTCTTAA GTTCAACCAT TTTAGCTCCT TCACTGGAGC 
    TTCACATCGG GTGCAATGGC GGGCAGTAGG AAGATTTGTC ATTCTCTGAT 
    CGTTTTCCTC ATAGCGATTT CTACAGACTA CGGTGTTTCC GCGGATTCAA 
    TAAAAGGCTG CGGTGGTTTT GTCCAGGGTT ATCTCTCTTT TTTTT

AT3G62360.1

Model type
Protein coding
Short Description
Carbohydrate-binding-like fold
Computational Description
Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784); Has 321 Blast hits to 256 proteins in 98 species: Archae - 6; Bacteria - 117; Metazoa - 138; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62370.1

Model type
Protein coding
Short Description
heme binding
Computational Description
heme binding; FUNCTIONS IN: heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c-552/DMSO reductase-like, haem-binding domain (InterPro:IPR019020); Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR