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GT17024

CSHL Arabidopsis genetrap mutant lines

Original: GT17024

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17024

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17805510 [Map]; Strand: c
      • AT2G42790.1 - [+] show detail - citrate synthase 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17024 - 5-prime edge 
    CCTACTTTCT CCCTGATCCT TCGTTACCGT GGCTACCCAA TTGAGGAAAT 
    GGCTGAGAAC AGTACTTTTC TGGAGGTGGC TTATCTTCTC AGTAAGTGTT 
    TTACCTTTTA ACCTTACTAC ACAATTTCAA GTGTTATGTG TATCGAATTG 
    GACATTGATG AAAAGTTTTC TCCTTTACTA TATTTTCTGG CAGTGTATGG 
    GAATCTGCCC TCTGAAAGTC AGCTATCTGA TTGGGAGTTT GCAGTTTCTC 
    AGCATTCAGC TGTGCCACAA GGTGTATTAG TGAGTCTCTA ATCCTTGGTT 
    GATGGATTTC AATTTCGATT TGTAAAATGG AGTTAGCCTG TTCTTTACTA 
    GTAGCCT

AT2G42790.1

Model type
Protein coding
Short Description
citrate synthase 3
Curator Summary
Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.
Computational Description
citrate synthase 3 (CSY3); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase active site (InterPro:IPR019810); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13520 Blast hits to 13518 proteins in 3201 species: Archae - 174; Bacteria - 8544; Metazoa - 357; Fungi - 325; Plants - 176; Viruses - 0; Other Eukaryotes - 3944 (source: NCBI BLink).
Link
InterPro Scan - TAIR