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GT17070

CSHL Arabidopsis genetrap mutant lines

Original: GT17070

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17070

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1260659 [Map]; Strand: w
      • AT4G02820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT17070 - 3-prime edge 
    GTAGAGGATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTTTGGAG 
    GTGAACAAAT CCACTTTGGA CACAAGTCTT TGAAAGCTTA CATAAGCTTA 
    CACAAGTCAT AACTACCCAA CAAGAAGAGT CGAAGTAGGT TTTTCAGTTA 
    GTCAACCTCT CAAAGATCAT TTGACATCAT CAGAAGAACT ATAGAGAACC 
    AAAAATATAA AAAGAGATTT TAATCATATT AAATTCTGAA AAGAAAAAAA 
    ACAGGAAAAT CATATCTTTG TAGCAACTTC ATTCCTTAGC AGCTTTGAAC 
    ACTCTCCTCA AGCTCTATAT GTCCGAGCAA GTGGAATGTT ACTGCTTCAA 
    ACGAGTATCT CGATTGGTAC CGACTTGAGA GAGCGGTTTC TGTATTCTTC 
    GGTTTGTGGA AGTTGCAGAC TGAAACTAAC TCTGTAGCTT TCATACTAAG 
    AAATGGTGGA CGAGATTTCA GTCACACGCA TTTGACTGGT TAGTCTTATA 
    AGCTCCTTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1260715 [Map]; Strand: w
      • AT4G02820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 50; Region: intergenic
      • AT4G02830.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1530; Region: intergenic
    Flanking Genome Sequence: GT17070 - 5-prime edge 
    CCATCCTACT TTCTCCCTGC TCAAACACTT AGTCAACTAT TTTAACCATA 
    AACCCATATC CATAAAGCTT AATAAATTTT TTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1260721 [Map]; Strand: w
      • AT4G02820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 56; Region: intergenic
      • AT4G02830.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1524; Region: intergenic
    Flanking Genome Sequence: GT17070 - 5-prime edge 
    TACTTTCTCC CTGCTCAAAC ACTTAGTCAA CTATTTTAAC CATAAACCCA 
    TATCCATAAA GCTTAATAAA TTTTTTCCTA AAAGAACATT TTCATGGCTC 
    TACTATACAC CAATTATTAT AGCATTTTTA AAGCTGGTAG GTAAACTAGA 
    TTTGGGTATC CATAAAACCT TAGCATTGGA TGTGTTTGAA TCTTATTCCT 
    CGGTTTATTT TAATTGAAGT AGATGGTTAA TTGTAAAACT ATAATTGGCA 
    GGCTAGAGCT AGCCGCCCAT ACTAATTATT AATTACTAAA TTTATCTCCT 
    CGAGTAGTCA TGTAGTCTCA CGACTAATCT TGATATAGAG AGCCCACTTG 
    AGGTAAAGAT CATCAACTAA TAAAATCATC TTAAAAGAAG TTCGACGAAC 
    TTGGGTTGGT TGGTGAAGGT TGTTAAGAAG AAGTGGCGTC GTTGGTCGTT 
    TGATTTTCCT TATTTTTCAA TAAAATTAAA AATATAGAGA GAGATATGGA 
    TTATGGGATA GTAGACGACT ATAATTAATA A

AT4G02820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 15018 Blast hits to 7498 proteins in 232 species: Archae - 0; Bacteria - 55; Metazoa - 87; Fungi - 92; Plants - 14442; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02830.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.
Link
InterPro Scan - TAIR