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GT17078

CSHL Arabidopsis genetrap mutant lines

Original: GT17078

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17078

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 139888 [Map]; Strand: c
      • AT1G01355.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 320; Region: intergenic
      • AT1G01360.1 - [+] show detail - regulatory component of ABA receptor 1
        Distance: -2083; Region: intergenic
    Flanking Genome Sequence: GT17078 - 3-prime edge 
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATGACTCAG 
    CTTAAAATAA CTACAAAGAG CATAACAAGC TGGCTAATAC TTAAAAATGT 
    AAAATCAGAT TCAACAGAAC CCAATGGTTT TGTGTGTGTT TTCAGACCTT 
    TAGATTTCGC AAAGCCCACC AGAAACAATG GTTGCAAATA CTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 139831 [Map]; Strand: c
      • AT1G01355.1 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 263; Region: intergenic
      • AT1G01360.1 - [+] show detail - regulatory component of ABA receptor 1
        Distance: -2140; Region: intergenic
    Flanking Genome Sequence: GT17078 - 5-prime edge 
    CCTACTTTCT CCCTGAGCTG AGATTGACCA GTTTCTAGTT GCATCTCTAG 
    CATATGTATC TGGAACTCTA ACACAATTCA AACAAGTCAT CATTTTCTCA 
    CCAGTTGCTT TTGTTGTTGC AGTTCATTGG GACAAAATCT CCAAAAAAGC 
    AAATTCGTTG GAGAAATCAG TAACATTAAC TCACACAACT CTTACTACTA 
    CTCATAGCTT AAGATAACAC CATTATTATC AGTTAACACA CAAAGAAAAC 
    CAGAGTTTAC GAGGATTTAG AAGATGTTGA ACATAAAAAG GATTAGATAG 
    CTTAAGATAA CATTAACACA CACACAACTC TTACTACTCT TCTTCGTCGT 
    CTTCAGAGTC TCGTACGTAG TCGTCTCCAT CGGTTTCATC ATCTTCGTTA 
    CGGTAGTATT GAGACTGCTC ATTGACAAAA CAAAATATGG GGTCAAATTT 
    AGGCAAAACA TAACTGGAAG AATTAAGTGA GAAAGGGAAA CTCGCGGTAA 
    GAGGTTGTTG ACTCAAATGG ACACAACAAG TCTGCGTTTT TGGCTAGGAT 
    GCTTACTTCA TGTGCA

AT1G01355.1

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G35640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01360.1

Model type
Protein coding
Short Description
regulatory component of ABA receptor 1
Curator Summary
Encodes RCAR1 (regulatory components of ABA receptor). Interacts with and regulates the type 2C protein phosphatases (PP2Cs) ABI1 and ABI2. Functions as abscisic acid sensor.
Computational Description
regulatory component of ABA receptor 1 (RCAR1); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: PYR1-like 7 (TAIR:AT4G01026.1); Has 395 Blast hits to 395 proteins in 28 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 392; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR