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GT17083

CSHL Arabidopsis genetrap mutant lines

Original: GT17083

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17083

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 767684 [Map]; Strand: c
      • AT4G01780.1 - [+] show detail - XH/XS domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17083 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACACAC 
    ATGCATGCCT TTAAAAGCTG TGGCTCCAAA ATATTATAGT TCATTGTCTA 
    TCTGTCTTAC TCTTTCATCT CACTCGACAA AGAGTAGATG GTCATGGAAA 
    GAAGGACTGG ATGAAAAAAG ACGGTCCCAA GTTAGGTCTT TACGGGTGGA 
    TAGCTGGTGC TGATGATTAT AACGGTAATA ATATTATCGG AGAAAACTTG 
    AGGAAGACCG GTGATCTCAA AACTATAGCT GAGCTTACGG AAGAAGAGGC 
    GAGGAAACAG CAAATGCTTG TGAAGAATCT GAGACAAGTT GTAGAAGAGA 
    AGATAAAAGA CGTGAAGGAG ATTGAGGAGC TTTGTTCAGT GAAGTCAGAG 
    GAACTTAATC AGTTGATGGA AGAGAAGGAG AAGAATCAGC AAAGCTGAAT 
    GCTATACAAG AGAGAACAAT GAGGCATATT CAAAAGATAG TTGATGACCA 
    TGAGAGATTG ACGAAGCTGT TGGAGTCAGA GAAGAAGAAA CTCGAAATCA 
    AAGGTAATGA GTTGGCAAAG CGCCAAGTGC ACAATGGAAC CGAGAGAATG 
    AAATTGTCTG AAGATCTTGA ACAGGTAAAA CATTTACTCT CTGTATCTCT 
    CTTTTTTTTA AGATATAAGT CCATGTGTTG ATGTGTACTT AACAGAGGCA 
    AAAGGAGGAG CTTCATGAGA AAATCATAAG ACTAGAAAGA CAGATAGATC 
    AGGTACAAGC GATTGAGCTA GAGGTTGAGC AGTTGAAAGG ACAGCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 767624 [Map]; Strand: c
      • AT4G01780.1 - [+] show detail - XH/XS domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17083 - 5-prime edge 
    TTTCTCCCTG CCCGCGGGTC GACCATCTTG TGCCTTTGTA GTTGGAATAT 
    TAACAACAAT GCCTGTTTCA GCCACGTATA CACAATCACT AAACACACAT 
    TGCAATTCAA TCTTAAGAAG AAAAGTAAGA ACCTTAAAAG TTAAAAGTGT 
    GTGTACCTTT CCAAGGATGC ACAAGCTTCT CGTGATGATC ACAATCTTGA 
    ATAGGGTTTC CGAACTAGAC CAAACGAAAC GAACCGAACT AGACCAAACG 
    AAATTGAACA TTTCGTAACC TAATCCATAA CAACTCGAGA TGCAGAAATG 
    AGTAACAGAG CATTTTAGTA CTCAATTCCA ATTTGAATTC GAATACCAAT 
    AAACCAAACT AAGGCTAACT GCCTAGTGCC TCCCATCAAA TTCA

AT4G01780.1

Model type
Protein coding
Short Description
XH/XS domain-containing protein
Computational Description
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 3523 Blast hits to 2927 proteins in 400 species: Archae - 106; Bacteria - 327; Metazoa - 1271; Fungi - 161; Plants - 347; Viruses - 11; Other Eukaryotes - 1300 (source: NCBI BLink).
Link
InterPro Scan - TAIR