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GT17084

CSHL Arabidopsis genetrap mutant lines

Original: GT17084

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17084

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3564953 [Map]; Strand: c
      • AT3G11380.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17084 - 3-prime edge 
    GAAACAGAGG AATGGTTGGG TCATGACTAT AAGGAACTCA TGAGCCTATA 
    TGGTGAAGCA GGAGAGATAG AAGATGTTCA CCGTGTATAG GACAAGTACA 
    AGGCGACAAG ACAGAAGGAT AATGAAGAAT TTCGAACTTT GATTGGTTCT 
    CTCTTGAAGC TTGGTGATAC CAAAGGAGCA GAGAAGATAT ACTACAATGA 
    GTGTGAGTGC TCCGGTCTTG AGTTTGATAA CCGAATCCCC GATATGTTGG 
    TGTCGGGTTA TCGCGAAAAG GGAATGGTGA TGAAGGCAGA TAAACTGGTG 
    AACAAGACTT TGTGGATCAG AGGATTGGCT ACACCAATCA CTCTGTTGCT 
    GGAAGAAATG GATAAAAAGG GGAATAAAGT GAGTCCGTCG GGCTTGAGAG 
    ACCTCATCAA GAATCTACGT GATTCA

AT3G11380.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 4044 Blast hits to 2539 proteins in 107 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 3964; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR