1. Home
  2. Mutant Lines
  3. GT17104

GT17104

CSHL Arabidopsis genetrap mutant lines

Original: GT17104

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17104

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 886665 [Map]; Strand: w
      • AT4G02020.1 - [+] show detail - SET domain-containing protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17104 - 5-prime edge 
    TCATCCTACT TTCTCTCTGT CGACAGTCTG ATTGCGGAAA AGCAGAGAGA 
    GAGAGAAAGT TCGAGCGGAA GAGAAGCGGA AAGCTCGAGG AGTCATCAAT 
    GGTGACGGAC GATAGCAACT CCTCTGGACG AATCGTACTC AGATTTACCT 
    TTCAATCTCC TCTCTTTTTT TTTTTGGATT AAAAAAAGAA TTTTGGCCGG 
    GGGGGGAGGA ATTTTCGGGT TTTTTCCGGG GGTTGGGGGG AAAACCCGTT 
    GGGGTTCCCA AAAATAAAAC CCCCTTTTTT TTTTTTTCCC CGGGGGGGGG 
    GGGGGGCCCT TAAAAAAAAG GGGGTTTCCC CCCGGGGTTT GGTTTTTAAA 
    CCAATTTTTT TTTTTTTTGG GGCTTTTAAA AAAAAACTCC TGGGAAAAAA 
    AAAAAAAAGG GGGAAAAAAA AAAAAAAAAA CCCCGGGGGT TTGGAAAAAA 
    AATTTGGGGG GTTTTAAGGG AAATTTTGGG GGGAAAAGTT TGGGTTTTTT 
    AA

AT4G02020.1

Model type
Protein coding
Short Description
SET domain-containing protein
Curator Summary
Encodes a polycomb group protein. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG.
Computational Description
SWINGER (SWN); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT2G23380.1); Has 5041 Blast hits to 4734 proteins in 465 species: Archae - 0; Bacteria - 399; Metazoa - 2132; Fungi - 472; Plants - 1030; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).
Link
InterPro Scan - TAIR