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GT17110

CSHL Arabidopsis genetrap mutant lines

Original: GT17110

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17110

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11112428 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17110 - 3-prime edge 
    ACCGACCGTT ACCGTACCGT TTTCATCCCT AATCCGCATC TCCACTTCCA 
    TCCCCACCAA ACCGCCATAG CAAACACCGT GGACCAAGAG CTCTCTTGAA 
    AAGGGGTTTC TTCGTGCAGA TTATCAAACA CCCATTCAAA CAAAGTCTTG 
    TCGAAGAACG CACGCCGCTT CCTCTGAGGC ACAATTCTAG TCCAGATCCC 
    TGACATAGCT GGAACATCTC TGAGAATGTG TAAAGTGGTC TCTACTCCCC 
    CTTTACAAAT CTGACAAATC TCCGACTCAC CGATATGCCT TCGATAACGC 
    TCTGCATCTG TCATAATCCC TTGATTGACC ACTAACCAGA AGAAAGCTCT 
    CACACGTTCT GGAACCTTAA CTCTCCATAT CCGATAAAAG AATTTCTCCA 
    TATTAGGTCG TGGACTATCA TCCCAACTCA GCATATTATA AGCGGACGAT 
    ACACTGAATT GGCCATTCTG ACTCTCATTC CAGGAGATTC TGTCTCTCGC 
    CACTGTCTCA TGATCCAATA CGATTGCCCG TAGCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11112331 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17110 - 5-prime edge 
    TTTTGGTGAG AAAGGAAATG CAGGGATAGA GTTCAGTTCA TCTCGCATGT 
    CGAGAAGGAA GTATTTGTGG CGAATGCAAG GGCTACAGTG CTTAACGGGA 
    TTCCGACAAG AGTGGAGAGG CAGATTGGAT GGGTCGCACC AAGTACGGGT 
    TGGTATAAGG TGAACACAGA CGGTGCTTCT CGTGGAAACC CGGGGTTAGC 
    GACGGTGGGT GGTGTGATAC GGGATGGAGC TGGAAATTGG TGTGGAGGCT 
    TTGCGCTTA

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR