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GT17117

CSHL Arabidopsis genetrap mutant lines

Original: GT17117

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17117

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17781495 [Map]; Strand: c
      • AT1G48130.1 - [+] show detail - 1-cysteine peroxiredoxin 1
        Distance: 0; Region: exon4 (CDS)
      • AT1G48140.2 - [+] show detail - dolichol-phosphate mannosyltransferase-related
        Distance: -536; Region: promoter
      • AT1G48140.1 - [+] show detail - dolichol-phosphate mannosyltransferase-related
        Distance: -547; Region: promoter
    Flanking Genome Sequence: GT17117 - 3-prime edge 
    TTTACCGACC GGTACCGATC GTTTTCATCC CTATCTGCGA CAAACAGAGG 
    TCTCTTGAAA AGATAATAAC AAAAGCCTAC TATATAACGT ACATGCAAGT 
    ATTGTATGAT ATTAATGTTT TTACGTACGT GTAAACAAAA ATAATTACGT 
    TTGTAACGTA TGGTGATGAT GTGGTGCACT AGGTGTAGGC CTTGTATTAA 
    TAAAAAGAAG TTTGTTCTAT ATAGAGTGGT TTAGTACGAC GATTTATTTA 
    CTAGTCGGAT TGGAATAGAG AACCGAATTC TTCAATCCTT GCTTTTGATC 
    AAGAATTGAA ACCGAATCAA ATGTAAAAGT TGATATATTT GAAAAACGTA 
    TTGAGCTTAT GAAAATGCTA ATACTCTCAT CTGTATGGAA AAGTGACTTT 
    AAAACCGAAC TTAAAAGTGA CAAAAGGGGA ATATCGCATC AAACCGAATG 
    AAACCGATAT GAAACCGCAT CAAACCGATA TAGCGTGAAC CAAAATGTGG 
    ATTAATGACA TTTAGACCGG AGGAACATAA GTGGGGACTA TACGGCATCG 
    TTTTAGTGTA TAAGTGAATT CGCA

AT1G48130.1

Model type
Protein coding
Short Description
1-cysteine peroxiredoxin 1
Curator Summary
encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
Computational Description
1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G48140.1

Model type
Protein coding
Short Description
dolichol-phosphate mannosyltransferase-related
Computational Description
dolichol-phosphate mannosyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichol-phosphate mannosyltransferase subunit 3 (InterPro:IPR013174); Has 82 Blast hits to 81 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 13; Plants - 38; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G48140.2

Model type
Protein coding
Short Description
dolichol-phosphate mannosyltransferase-related
Computational Description
dolichol-phosphate mannosyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichol-phosphate mannosyltransferase subunit 3 (InterPro:IPR013174).
Link
InterPro Scan - TAIR