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GT17125

CSHL Arabidopsis genetrap mutant lines

Original: GT17125

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17125

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2768988 [Map]; Strand: c
      • AT3G09060.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -558; Region: promoter
      • AT3G09070.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17125 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATA 
    GCTTTCATAT GTGGCAAGTA AAACTTCAAC ATTCCGTTTT CCCCATTCTT 
    AGGTGAGTAC CTTGAACTCT TATTCCTCCT ATCCAATCCG TTGACTTTCC 
    TCGCTGATCC ACCTCCGGAA CTCCTCCAGC TCACATTGCT ATTACTCCTC 
    ACCATCCTCG GCCCTCCTCC TCCTCCTCCT CCATTCCTCA GCTCCGGCCA 
    TGACTCCGAT AACGATCTCT CCACCATTCC ACCGTTTAAT CTCCTATACC 
    TATCCTCTTC CTCCTCCTCC TCTTCCTCAT ACTTGTTAAC ACTCTTCCTG 
    TAAATAAGTC CTAAAATGCT CCACTTCCCC CACCGTCTCG ACTTCTTGTT 
    ATTATCGTTA CTATTCACTT TCCTATCGCC GATCATCATC GCCGGTTCCC 
    GGAAAGATCC GTTATCTGCC GTCTCCACGG CGTAGTTGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2768916 [Map]; Strand: c
      • AT3G09060.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -486; Region: promoter
      • AT3G09070.1 - [+] show detail - Protein of unknown function (DUF740)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17125 - 5-prime edge 
    GCTAGCCGGA GAATGAGCGG TACAGGAGGA GCAGGAGGTG GCGGCGGCGG 
    AGGGTGGGCG AATAGTCACG GGCATTCTAT AGCGAGGAGT GTAATGAGGC 
    TGTATTGATC AACAAAATTG TTCATTGGAT GGTTTAATTA GCTCTATGAA 
    GCTGAACCTT TGTTTTTAGT ATTTCGTTGG TTTAGGTTTA ATTTCGGTTC 
    AATTGGTTTA CTTTGTAATG TTAAGGAGGG GATGCATTCT CAAACGAATC 
    ACTTGTTGTC GTTGTCTATT TTAACCGGAA TAAACCGCCA TTCGACCAGC 
    TATATTTTTG GTTCCAGGCT TCCCAATCAA CACCTAAATT TTTTCCAATG 
    ATTAACCAAA TTTTGATTAG TTAATTTTCA TTGGAACAAA TAAATTGAAT 
    AGTCTGATAA TTTTGTTAGT TAACCTAAAT TAAAATTTTA AAATCGAAAG 
    AGATTGTTGA CTAACTATAA TCAACAAAGA GTTTATTACT TCACTTCTAA 
    TTAAAGGCAA AAAGCCCAAA ACATGCCGGA GAAATAACGT TCACCAAAAA 
    CTCTCACATG GTCGTGTTCC CAAAGTCGCT GTCACCCAAA CACGTCCTTA 
    AGCTCTTGAA ATCGGAGAAG AACCCGCGTG CGGCTTTTGC TC

AT3G09060.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF740)
Computational Description
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT5G01170.1); Has 844 Blast hits to 758 proteins in 136 species: Archae - 0; Bacteria - 50; Metazoa - 319; Fungi - 62; Plants - 144; Viruses - 44; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR