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GT17130

CSHL Arabidopsis genetrap mutant lines

Original: GT17130

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17130

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15552026 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT17130 - 3-prime edge 
    ACCACCGATT TACCGTCATT TCTTCGAGGC AAACGGTCCA AGAAAGTGGC 
    CTCGTAGCTA GGTCGGGGGT TCATGAAGAA GAAGTACGGA TCCCAGAATT 
    TCACACCTCT AACTGTCGTC CCGATGAACA TCCCTTGCTT GCAGTTCATG 
    GCCACCCGAC CGGATCGCAT CGGTATATTC ATCTCACTCG ACAACCAAAA 
    TCTTTTATTT GCGACATAGG TAATACGCGA AAGATTTATA AAAATAGGAG 
    TGTCATGAAA CATGACACAA CTAGCTCCAC CAGATTCTTG AAGAAGTTGG 
    TTGTAGGCCC TCATTGCTAC CATCAGATGT TTCTTTCACC ATAAAAATAT 
    TTTGTAAAAA TCAGATATTT ATTAGTGACT ATTATAAGAT ATAAGACAAA 
    ATGAATAATC ATGATTTTCT AATTACCTGA TGTTGTAATA ATCATATGTC 
    GTCCGACGTT GAGCAAATGC CTCAAAGCTA CTGTTTCTTT GACCACATCG 
    TTGAGCAAAT ATCTCAGGAA GGATCCTTCT GATAACAGCC AATTTCTCTG 
    GTTTTGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15552147 [Map]; Strand: w
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT17130 - 5-prime edge 
    CTTTCTCCCT GGATGACAGT AAAGCGAGGT TCAGTACAAA GTGATCATTT 
    CCGAATCGAT TCGTATTTCG AACGTATCTG ACACGTGTCA AATCGCCGCG 
    TCTGTACGCG CGCGTGAAGC TCAGGAACCG AAGCGTCTCG TAGGTTTAAT 
    GATGACCTCG TAGGTTTGTC GCCCAATCGC CTCTATTTAT ATTAGATTAA 
    ACCCTCGGGA AATCATTTTC CGCCGCTTGC AAGAAGAATC TAAGGTAGCT 
    CTCGCTCTCT CCTCTGCGAA TTATTTTGTA CTCTCGATTC TTTATCGATT 
    TTTCCGGCAA TGGGTAAG

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR