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GT17139

CSHL Arabidopsis genetrap mutant lines

Original: GT17139

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17139

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5748619 [Map]; Strand: c
      • AT3G16850.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17139 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATCTCC 
    TCTTCCTCTG GTCTTTTTTT CTTTTGTTGC GACTTTTCTT CTTCTTCTTC 
    CTCAGGAACT TAAGTTTCTG AGTCCATGAA GATGCCAGTA AGTACGTTTC 
    TCCCTTTCTT TAATTCTTAT TTTTGATTTT TTTGTCTAAT GAGTTTGGCT 
    TAATCTCTGT CTGCAATTCT ATGATTCTCT CAGTTAAATT TTGGTAAAGA 
    AAATCATATG AAATCGAGAT AGCTTCTAGG ATTCTTACCT CAGTTCTGTG 
    TTATTTGTTT GTAATCGAGA CCTCTCTGCA GCCAAATCTA GAAATCTGTC 
    TTTAGATTCC TCTGTTTTTT TTTTGTACTT ACAGGCTCTG TTACTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 15735462 [Map]; Strand: c
      • AT3G43870.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 6312; Region: intergenic
      • AT3G43880.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2711; Region: intergenic
    Flanking Genome Sequence: GT17139 - 5-prime edge 
    AACCAAATCT TTCTCGTACA TCTCCATTTG ATGAACTGTC GGCAATTTTC 
    TATCCTCCAC AACCAAAAAC GCAGAGTGTT AGTGATTCCA CCATAGATTA 
    CTCTTTTATT TCTGATTCAT TTTCAAGAGT GTCAAACAAT ACCTGTTTAC 
    TAATAATACA TCGCGAAGGA AGGAATGACA TAAAGAAAAT AAAATCAGTT 
    GATCTCAACC TATCTATGGA GTTTGATTTG ATTAATGCGA GTTAAAATTT 
    ACCATCGGAA AGAAAAATGC TTACCATTTT AATTTTTGAT TAAGAATTAC 
    AATAGTAAGC ATTACATTTA TGTTGATTTA CACTTTGATT TAGGCAATTT 
    CGTGTCTTAT TTCAGATTCA TTTAAGTTTT CCACCATAAA CCTTCAACAA 
    TATATTTATA GCAACGAGTT TCATGATTTT GTAACGTGAA TTTGTCTCTT 
    TGACAGAAGA ACACACAAGA TCAGATTCAT GACCCTAATA TCCAAACGTA 
    GATGACAATG CTAAAT

AT3G16850.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8; Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G43870.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44210.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G43880.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits to 32 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR