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Mutant Lines
GT17148

GT17148

CSHL Arabidopsis genetrap mutant lines

Original: GT17148

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17148

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 11557 [Map]; Strand: c
- AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: 0; Region: exon8 (3UTR)

TAGATAAGAA GTCATTCCTA CAGCTCATGT GTACCACAAT TCTCTCTCTT 
TTCTCCAACA CCCCAACTAA AACAATCTAA GCCGTTTCTG AATGTTTTCC 
GGATCTGCTG AGTCATAAAT ACGAGTGCTT TAGGCAGGCA AATAAGACTC 
CAGCATCAAT TTGGCTGGGG AAGGTGTTAA AATCTCAACG ATCAGGTACG 
TGTATTTCCA TTCCTTCTCT GCCTTGTCTT TAAACATCTC CGTGTACACT 
TTCCCTGCTC CTTGAGGCCC ACGGATGTAG AAGTTTACCT GAAGCATATT 
CAATTTTGAT CATGTTAAAC CTGCAAAACT CTAGACAATT TATATAGCAA 
GAAT

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 11008 [Map]; Strand: c
  - AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: -644; Region: promoter
  - AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: -553; Region: promoter
Flanking Genome Sequence: GT17148 - 5-prime edge
```
TTAATCTTGT GTTTAATTAA GAAAAAGAAA AACACAAAAA AGTTGAAAGG 
TTTAGTGGTG CATCCACGTA GCAAGACATT TTAGGTGTAC GTCGACCATA 
TTGTTGGCCG TTTATAGAGC ATCATCCACT CTCCTCGACG AGCAAGATCA 
TGCCGCCTCT
```

AT4G00020.1

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00020.2

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00026.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR