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GT17161

CSHL Arabidopsis genetrap mutant lines

Original: GT17161

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17161

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23384955 [Map]; Strand: w
    Flanking Genome Sequence: GT17161 - 3-prime edge
    AAAGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTATATATA 
    CAGATAGACA AAGTAACGTT TAGGTATTTC ACCTTTTCTT TTTCTTTTAA
    AGAAAAATGT GATTATATTT CGATGAGAGT AGGAGTGAGT AGTACTACTC
    TTGACATAAT ATATAGTCGT TGCATAAATA ATGGATTACT ACTATAAAAA
    AAAAAGACGT CCCTTTTCAA AAAAAAGGCC GCATTTTTGC CAATCCCATG
    GTTTATTACA CAAAAATATT CCTTTAAATG TTTGTTTCAC CAAGTTTTGA
    AAAAAAGGAG GGAATCAAGC CACCCTGGAA TTGGCCTTTT CTAAATTAAA
    CCAAAAACTT TGGGATAGTT GGACTAGCCA GCCATAGGTT ATCAAACTTT
    TTTGTTTCAT TTGCCCAAAA AAAAAAGGAA AAAAAGGTTA AATTTGCTTT
    AAAAGGGTCT GGTTAAAACC AATCAAACAA CTGGGTTTAT GGTGGGGGAT
    CAGGGTAAAA CTAACGGATT AGGGGCTAAA ATTTGGGGTG AAAAATTGGG
    GGGAAAAAAA AAATGAGAAT AAGGGATTGA ACCGCCTGTG TATAATAATC
    AGCCAGCCTC TAAATTGGGC CCCTCCGGCT TCGGTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23385017 [Map]; Strand: w
      • AT3G63300.1 - [+] show detail - FORKED 1
        Distance: 0; Region: exon1 (5UTR)
      • AT3G63300.2 - [+] show detail - FORKED 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17161 - 5-prime edge
    ACTTTCTCCC TGATATATAC CACACACATA AGTTTCCTAG TCAAGCTCTG 
    AAGTCGAAGC AAAGTTAATT AGAGAGAGAG AGAAAGGATG GAGAGAGAAC
    TCAGACGACC GAACCCAATC AACAGCTCTC GCCGGCCGGA GATATTTTCT
    TCAGGCGGTA ATAGTACTCA ACTACCGGAA AGCCCACGAG GCCCAATGGA
    GTTCTTGTCT AGATCCTGGA GTGTCTCTGC CTTGGAAGTC TCCAGAGCTC
    TCCACACCGC CAAATCAGCT TCAGCCACCA ACAGGCCTCC CTCATCCATT
    AACACTCCGA TACCGGAAGA AACGCTAAAC CCTGAGAAAG AAGAATGTCC
    GCCGGAGAAC AGTACTAGTG TTAGTAGCCA GTTCTCGTTC GCTGCCTCGG
    CCACTTCACA GCTTGTTCTT GAGCGCATAA TGTCTCAATC GGTACGTTTA
    CATAGCTATG GACCGACCGA CACACACTGT TTTTGTATCT TGATGATGAG
    TTTATTCTGT TTTGAAAAAT GAAGGAGGTG TCACCGTTAA CGTCGGGGAG
    GCTATCACAC AGCAGCGGCC CACTCAACGG CGGCGGTTCT TTTACGGAGA
    CAGACAGTCC TCCCATCTCC CCTTCC

AT3G63300.1

Model type
Protein coding
Short Description
FORKED 1
Curator Summary
Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent manner. proposed to be a key component of the auxin canalization pathway.
Computational Description
FORKED 1 (FKD1); CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 742 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 118; Metazoa - 127; Fungi - 51; Plants - 226; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63300.2

Model type
Protein coding
Short Description
FORKED 1
Curator Summary
Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent manner. proposed to be a key component of the auxin canalization pathway.
Computational Description
FORKED 1 (FKD1); CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR