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Mutant Lines
GT17165

GT17165

CSHL Arabidopsis genetrap mutant lines

Original: GT17165

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17165

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 28627314 [Map]; Strand: w
- AT1G76300.1 - [+] show detail - snRNP core protein SMD3
  Distance: 0; Region: exon5 (3UTR)

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATATTCT 
ACATAAGATG TGGGAAGTCT CTCAATGACC ACATTAACAA AACATGTCAA 
TTTTTCAAAC ATCTTAGTAA CCCAAAACAC AGAACTAGTT CCTCTTTCTC 
TCTTCCCTCC ATGTCTTAGA GATTTTACTT GCTGTGTACC TTAAATGCAT 
AAGTGACGAG CTGAAGATGG CGGATTCTCA TGGATACTGC AGAGAATGTC 
TCACGAGCCG AAGCTACATT ACGAGGGTTA ACTAAACTAT CTCCTCACAG 
GTGGCACAGC CCCTCTTCCT CCTCCTGTTC CACGCCCAGT ACCCTGAGTA 
TGACATCACA AAATTCAATT AGTTGCTTTG AATTGTCAAC ATTGTCTTCT 
TGAGATGTAA ATCAGAAACA TTAAGGACTT AGGCAAAGGT GAACTTACTT 
TGGCTCGCAT TGCAGCACCT CTACCTCTGC CTACACCTAG TGAAGCGCTC 
TTTCCCTGTA TTGATCAAGT AAACAAGATG TTTATTAGCT TCCATGTTTA 
TAAAGCATAG ATGGGATTGA TATTCTCCAT CACGTTCAAG AAGTTTACCT 
TGCCCCTAAC ATCCTTGAAC ATTGGAGCAT TCTTTAACAT GTCTGGTATG 
ACTAAAAACC TGTCAAGATT TTACAAAATG TCACATAACA GTCAGCTAAG 
TTGAAAAAGA ATACTCCAAC AAAAGTAAAT AAGTAGGAAA CAAGCAGAGA 
TGTCAAAGGG AGTTTATATC TAGCAGCACC TGACTAAGCT GC

5 prime edge [+] show sequence

Chromosome: 1; Position: 28673471 [Map]; Strand: w
- AT1G76420.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
  Distance: 0; Region: exon2 (CDS)

ATCCTACTTT CTCGCCTCTG ATAGTCCTCA AACCTGTCGG ATATTTCCTG 
TCCCTTAGAC TATAAAAGTA CCACTCTACT CTCTCCCATC TTCGCCATTT 
CTTCATATAA CAACAATTTC AAAACGTTAC ACTTTTTTCT TGTTAAAAGA 
TTTATCAAAA TATTCAACTA AAAACAAGAT TCCAAAATAA AACTTATGAG 
GTAAAGAAGA GACAAAATGT ATAATATATT ACCTGGTAGC TCCCAAGGTT 
CACAGCGGTT GAGATCAACT TCGGAAATGT GAATGCCGGA GAGACCACCA 
TGGAAGATTT TGGAAGCTAA GTAGAAGGTA ATGAGCTCTT CTTCCGTCGG 
GTGAAACCGG AAGCCAGGTG GCAATCCTCT CTCGTTCCTT TCATCANCAC 
TCGACCAGAG NATGTTTGGT GTGTCGTCAA GCAACAGAGA TGCGTCACAT 
CCCTGAATTT TATGATTCAA AGAAAAATTC AGAGAGAAAA ACAGAGTAAA 
GATTAAGAAC AGAGAGAAAG ATTTAATGTG TTTACATTGA CGAAACAGTC 
GTGAAATTGG AAACGCATGA CGGAAGCGAC GCTTCTTGCT TCTTTGATCA 
TTGCTTTCTT C

AT1G76300.1

Model type: Protein coding
Short Description: snRNP core protein SMD3
Computational Description: snRNP core protein SMD3 (SmD3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nuclear body, nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G20580.1); Has 1247 Blast hits to 1247 proteins in 231 species: Archae - 2; Bacteria - 0; Metazoa - 471; Fungi - 341; Plants - 223; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G76420.1

Model type: Protein coding
Short Description: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator Summary: Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.
Computational Description: CUP SHAPED COTYLEDON3 (CUC3); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 38 (TAIR:AT2G24430.2); Has 3010 Blast hits to 3003 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3005; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR