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GT17176

CSHL Arabidopsis genetrap mutant lines

Original: GT17176

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17176

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7049973 [Map]; Strand: c
      • AT2G16280.1 - [+] show detail - 3-ketoacyl-CoA synthase 9
        Distance: -971; Region: promoter
    Flanking Genome Sequence: GT17176 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAT 
    GATGTTAACT GTATGAAATA TGTTATCTAA TTGTATTGGT CAATTTGAAA 
    GTGTTAATTG GTTGGTTATC GTGTTAACAC TCGTTACTCA TGTTTTCTTT 
    TGTAATGGAA GTGAGGAACA ATGTATGGTG CAGGTGAAAC TTAAGTGATC 
    GTCGACATAT ACATTGTTTC GATTATGATT TAGGAGATTC CAACTTTGAT 
    AAAATGGCAT TTTAGCGTTA TTAAATTATT GGTTAAATTT TATTGGAGTT 
    TCAGTTCTTA TTCAAGTTGC ATTTAACCTT TTTTGAAGTA TCACCTGTTT 
    TCATACAAAA CAAGCCATGG AGACGGATTT ATATATTCTG ATTATATAAA 
    GAAATAATAG GAGATTATTT AAATAATATA TATTTGGTTG ATTTATTGAG 
    ATTTATCTTT TATGTGTTCA TACTTCAGAC GCATATATGA CTCATATCTA 
    AAAATAATTT CTACTTGCAT TATCCGATTC TTTCTGTTGC TTTGTAATGG 
    CAGAGCTATC CATAAAGCTC TGCTTTGATT TTCATTACTT TTTTCAGTTG 
    TTACCTATAC TCTATATACA TATTTGCTTG ATCAATCAAT TTCACATTCA 
    AAAATAATAT AAAAAACTTC TACTTTCCTT CAAACAAAAA TGTAGTTTAA 
    TAGCACACCA CACATTCAAA TGAACAAAAT AAATATGATT GGGCCATTAT 
    AGAACCGCAG TCTTTAGAAG ACTATTCCAC ACCAACAACA CTCACATTAA 
    AGTAAATGCA GACATATGCT AAATCCTTTT GATACACATA AGATTTCGTT 
    GGCAAATTTA TTAACATTTC CTACTTGATT CGACTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30337900 [Map]; Strand: w
      • AT1G80720.1 - [+] show detail - Mitochondrial glycoprotein family protein
        Distance: 335; Region: intergenic
      • AT1G80730.1 - [+] show detail - zinc-finger protein 1
        Distance: 1423; Region: intergenic
    Flanking Genome Sequence: GT17176 - 5-prime edge 
    ACACCACAAG TTAAAAGGGA CAAGCCAGCT GAATCCGCGT CATTAGTGAA 
    GACATTTCAC TAATCTCAGT TCTCTGGATT AGATTTCGCA TATGATTAGA 
    AGTGAAGTTT GGATTTTTTG TTCATTTGAT TCTGTTGTTT GGTAGAATAA 
    TCAATAAGGT TATTTCCTGA TGTAAAAATC TAATAGGCTT TTCCGTGTAT 
    CTGTATAATG AAAACGTCAT TATCTAATAC AATTTTGGAT ATGTTTCTAC 
    TGAGAAAT

AT1G80720.1

Model type
Protein coding
Short Description
Mitochondrial glycoprotein family protein
Computational Description
Mitochondrial glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT1G15870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80730.1

Model type
Protein coding
Short Description
zinc-finger protein 1
Curator Summary
Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.
Computational Description
zinc-finger protein 1 (ZFP1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: photomorphogenesis; LOCATED IN: intracellular; EXPRESSED IN: inflorescence meristem, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G10970.1); Has 1054 Blast hits to 1054 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1051; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G16280.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 9
Curator Summary
Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 9 (KCS9); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 4 (TAIR:AT1G19440.1); Has 4705 Blast hits to 4688 proteins in 1155 species: Archae - 0; Bacteria - 1679; Metazoa - 0; Fungi - 8; Plants - 2880; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR