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GT17177

CSHL Arabidopsis genetrap mutant lines

Original: GT17177

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17177

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30337808 [Map]; Strand: w
      • AT1G80720.1 - [+] show detail - Mitochondrial glycoprotein family protein
        Distance: 243; Region: intergenic
      • AT1G80730.1 - [+] show detail - zinc-finger protein 1
        Distance: 1515; Region: intergenic
    Flanking Genome Sequence: GT17177 - 3-prime edge 
    AAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG 
    TTACCACCAC ACTTATGGAA TTAAAATTTA AAAGTTGCTA CTCTGTTAAG 
    GAACACTAGA ATTGATTTGG AAGTCACAAG TTAGAGTCAA AAGTGTTAGA 
    TAACAAGTTC CTAAGGGGGA AACAAAAGTT ACCCGAGAAG CCATCATTTT 
    ACAAACTTAA CTAAGACACT TTCAATCTTC ATTGCTGGTA AGAAACAGAG 
    CAAACAAGAG ACACCAGAAA TATGTGACGT GTATTGCTGA AATGATGTGA 
    GTATTCAAAT GAGTACCCAT GCTCACAATT ATGCATCTGG AATAGTTTTT 
    ACACAATCTG CTAGCTAAGA ACCCAGCAAA CAAAATTTGT TGCAAATGAA 
    TTTATTGAAG CATATCCAAA TCAAAGAGAG TCATACTCAC ATACACAACG 
    GCCACTGAGC ATTCCATGGA ACCAAACAGT AGAAGATCGA AGACTTTTGC 
    TGCAGGCTGA TGCCTATTTT TG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30337853 [Map]; Strand: w
      • AT1G80720.1 - [+] show detail - Mitochondrial glycoprotein family protein
        Distance: 288; Region: intergenic
      • AT1G80730.1 - [+] show detail - zinc-finger protein 1
        Distance: 1470; Region: intergenic
    Flanking Genome Sequence: GT17177 - 5-prime edge 
    TTTCCATCCT ACTTTCTCCC TGGTGGTAAC TGTAGATTTA CAGTGAAACA 
    CCACAAGTTA AAAGGGACAA GCCAGCTGAA TCCGCGTAAT TAGTGAAGAC 
    ATTTCACTAA TCTCAGTTCT CTGGATTAGA TTTCGAATAT GATTAGAAGT 
    GAAGTTTGGA TTTTTTGTTC ATTTGATTCT GTTGTTTGGT AGAATAATCA 
    ATAAGGTTAT TTCATGATGT AAAAATCTAA TAGGCTTTTC CGTGTATCTG 
    TATAATGAAA ACGTCATTAT CTAATAGAAT TTTGGATATG TTTCTACTGT 
    GAAATGTGAT TTTTGTATGT TCATAAAAAT CTTAACCGAT GTGACGTATT 
    TGGATCATGT GGGGGATTAG TGAGGTAATT ATGGTGCATA ACAACATGAT 
    TTCCGCGTCG TTAACATTTT GATTTGTGGA AAAATATTGA TTGTTAACTG 
    CAATGATTAT CATTATATTA ACTTTAGTGT AAACATCAAC TTGATACGGA 
    CCTACTCAAA GCAAAATTCA CAGAATCTTT GGGTTATAAT TCATTAAATC 
    CAATAATAAT ACTAATTAAT TTTCACTAAT ATAGATACCA CTCCCCCTCC 
    CCCCCCCCCC CC

AT1G80720.1

Model type
Protein coding
Short Description
Mitochondrial glycoprotein family protein
Computational Description
Mitochondrial glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT1G15870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80730.1

Model type
Protein coding
Short Description
zinc-finger protein 1
Curator Summary
Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.
Computational Description
zinc-finger protein 1 (ZFP1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: photomorphogenesis; LOCATED IN: intracellular; EXPRESSED IN: inflorescence meristem, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G10970.1); Has 1054 Blast hits to 1054 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1051; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR