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GT17210

CSHL Arabidopsis genetrap mutant lines

Original: GT17210

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17210

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30380158 [Map]; Strand: w
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3677; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -3533; Region: intergenic
    Flanking Genome Sequence: GT17210 - 3-prime edge 
    TAATTTTGGA TGCATTTTTG CAAAGTCTTG ACTTTCTCTA ATTAACTAAG 
    CATATTAATT TGACATATTT TTACATAATG TTTCATTCGT TTTAAAATAA 
    CTAATAACTG TCGTTTACTT TTTTTTCAAT TTGTGTAAAA GTAACACAAC 
    AATACTATTC GGGGAGAATT AATCATATTT TTTTATGTTG GTTAGTTAAG 
    CAGTAGGTGT CTACTAGAGG ATGCATTGAA CTTAGTTAAA GGAACAAAAA 
    AGGCCGTACG ATTCATGAAC TAGTAAAAGT CTAAAACATG TGTTGTCTAT 
    TAAATATTAA TTATTATATA ATTTCTTGCC TCTTTTTCGA AATGGTCTTT 
    TGGATTTCGT TTTCAATGTC CATGTCCACT TAATTTTTAT GACCAAGTGT 
    GAAAATCAAA GACTAATCCC AAATTTTAGA TTCCATTCTT GCGAATTGTT 
    TTACTTTTCT CCTACTCCTA ATTTAGTAGT TAGTACTTCG TTTTTACATT 
    GGTTGTTGAA AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30380278 [Map]; Strand: w
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3797; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -3413; Region: intergenic
    Flanking Genome Sequence: GT17210 - 5-prime edge 
    TCCTACTTTC ATCCCTGCCC GAAGTTCTAG TGTGAATTAG TTCTGTCACT 
    AAAATATTCC GTTTAAACTC AAGTCTTATA AAATGTACGG ATATTATACC 
    TTTTGTTCTC TCTAGATTAT TATACCTTAA AAATGTAAAT TGGATGAGGA 
    TATTGAGGAA AAAAATAAGA CTTGGAAAGA AATATTAGTA AGCTTTTATT 
    AAAAAAAAAA AAAAAGGATA TTTTAAGACC CGGAAAAGAA CGGGCCCAAA 
    ATACTTGGGG GGGGAATGGG G

AT1G80831.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR