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GT17214

CSHL Arabidopsis genetrap mutant lines

Original: GT17214

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17214

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9271699 [Map]; Strand: c
      • AT4G16440.1 - [+] show detail - ferredoxin hydrogenases
        Distance: -30; Region: promoter
    Flanking Genome Sequence: GT17214 - 3-prime edge
    AATGAAACGG TAGAGGATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACTAAAAGGG GTTGAAAAAG TCAAAAATGT AAATTGCATA GCGGGCCTAG
    TAATAATCTT ATTGTGTAAG GGCCTAAATG CAAATAGAGA AGCAATAGAG
    GTCGGTGACA CAATGAGGGT GATGCTTTGC TCAACAATAA GTCAATAACC
    TTGGTCTCGT TTTTTATCAC AGCATATGGC ACATTGACAC AGAACATCAA
    TAGTCTAGTT TTACATATTG TTTGTCACAT ATAACATCAT CAAGAAGAAG
    AAGAAGAAGA ACCAACAAGA GCCTACACTT TTGTTACTAT ATGTTTCTTT
    AACAACAACA TTTTCAACAC TACTAAAGAC AAAGCCGCAT TCACTTCACC
    ACGGCGTGGT TCTGCGGTCT TTGGTGGCAC CGTACAAGCG GAAGAGACTA
    AAAGCAGAAA TGCAGGAGAC GAAAACCATA GCAATGGAGG CTAACAAGGC
    GCTAGAGACT CCTATAGCCA TTTGGTTGCA GAACTTTCCA TACATAGTAC
    ACACTCTCAT CCATTGCAAA TCTTCCTCTC CTTCCCTAGC AATCACACCA
    GACTCTGCTG TTGCTGCAAT GGCTGCCACA TTCAAGTACG CCATCGCCTG
    CTCATTCAAA ATCACAACTA CACTCTTAAA TGGCCAACGA AACTTCAATT
    CCAAATGCAA GCAAACAAGC AACATTCCTA CCTAAGTTAA TTCAATTCTG
    ATATCCAACC AAACCCATTT AATGCTTAGA GACTTTTCAA CATAGTACCC
    TACTTTTCTC TAATTTGACC TGAGATCTCA AAATAACAAA GCCAAACCCC
    AAAAATCCCA CATCCAATTC ACTAATTTT

AT4G16440.1

Model type
Protein coding
Short Description
ferredoxin hydrogenases
Curator Summary
Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.
Computational Description
ferredoxin hydrogenases; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 2574 Blast hits to 2544 proteins in 612 species: Archae - 1; Bacteria - 1826; Metazoa - 221; Fungi - 188; Plants - 72; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR