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GT17221

CSHL Arabidopsis genetrap mutant lines

Original: GT17221

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17221

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6181891 [Map]; Strand: w
      • AT4G09820.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -132; Region: promoter
    Flanking Genome Sequence: GT17221 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CCACCGGTAC CGACCGGTTT TATCCCTATT 
    TTGCAACAAG TTGACATAAG TAAAGTATAA TGCATGTAAT GACTTCTATG 
    TATATATGTA TGTATATGAA TGCATGACCA AAACTCAAGT GCATTAAAAG 
    TTGACTTTTG ATTTTTGAAT GGTTGGTTCA CCAGACGTTG GATGAGAAAG 
    TGGAATAGTG AAAAGATCTA TGTATCTTGT AGACGTGTCA TATACTAATT 
    GGACACATCA AAATACAGAA TGAATATATC TAATTATGTT ATGTAATTTT 
    ATTGTTCAGA AAGCATAACA TATTATTGTA GATAAAATAG CTAACTGACA 
    AACAAGTGAA AACAGAAGTT GCTTTGACTT GTGTTACTGC TACAAGGAGC 
    AAAGAACTAG CGTTTTTCAC ATTTCTATTA TTTATAAAAT TGATATTAAA 
    AATATGTATT GATTAAAATG TTCAGTAACA CTTTTAAAAA GTTGGAATTA 
    TTGGACGAAC ATTCTTATTT TTTTTAAAAT GAAGAGATAA CTTAACAAAA 
    GATGGGGAAT GGTAGAATTG TTGACCTGAC CCGTAAGTAA AGAATGAGAA 
    AATGGTTTGG GTGTAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6181944 [Map]; Strand: w
      • AT4G09820.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -79; Region: promoter
    Flanking Genome Sequence: GT17221 - 5-prime edge 
    TCCTACTTTC TCCCTGTTGC AAAGCACTAA GATGATATAC GTATACATGC 
    ATATTGCAAA AATCAGTGGT CCCATACCAT TTTAAGTCAT CATAAGCGTA 
    TGAGAGTAAA TTCTTCTCAC ATATTAATAA CAACCCTTCA AAGTTATAAG 
    ATTTTTAGAG AGAGAGCTAC CACGTTTTCG TATCTCCGGG AACGATGGAT 
    GAATCAAGTA TTATTCCGGC AGAGAAAGTG GCCGGAGCTG AGAAAAAAGA 
    GCTTCAAGGG CTGCTTAAGA CGGCGGTTCA ATCTGTGGAC TGGACTTATA 
    GTGTCTTCTG GCAATTTTGT CCTCAACAAC GGTTAGTTTC TTATCTCTAT 
    AGCTC

AT4G09820.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.
Computational Description
TRANSPARENT TESTA 8 (TT8); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome differentiation, regulation of flavonoid biosynthetic process, regulation of proanthocyanidin biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, micropylar endosperm; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 2828 Blast hits to 2555 proteins in 185 species: Archae - 0; Bacteria - 2; Metazoa - 59; Fungi - 73; Plants - 2682; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR