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GT17228

CSHL Arabidopsis genetrap mutant lines

Original: GT17228

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17228

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17349675 [Map]; Strand: c
      • AT2G41620.1 - [+] show detail - Nucleoporin interacting component (Nup93/Nic96-like) family protein
        Distance: 0; Region: intron15 (3UTR)
      • AT2G41616.1 - [+] show detail - MIR778a; miRNA
        Distance: -101; Region: promoter
    Flanking Genome Sequence: GT17228 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TACCTAAGAG 
    AATATTAAGA GAATATTACG AGAATATTAC GAACTTGCTA TAAAAGATAT 
    AAATCTTGGC AATAAGGAAA TATAGGATAT GGGCTTATAC GGCCCATGCA 
    GAAATTATTT TTCATAAACT AAGAAAACTT GGAACCTAGA GGATCTATCT 
    ATTAGATTAT TTTCTCAGAT TTCAGATTCT AATAAGATCC AAAGTAAGTA 
    GCTATTACGG TCAGATAACC AAGGATAAAA ACTGCAGAAT CACGATTTAG 
    CCATGGTAAC AAAACCCTAG AAGGACAGAC ATCGATTACC TGGAAATTTC 
    GCAGGAATTG AACATCTCTC TCTTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17349616 [Map]; Strand: c
      • AT2G41620.1 - [+] show detail - Nucleoporin interacting component (Nup93/Nic96-like) family protein
        Distance: 0; Region: intron15 (3UTR)
      • AT2G41616.1 - [+] show detail - MIR778a; miRNA
        Distance: -42; Region: promoter
    Flanking Genome Sequence: GT17228 - 5-prime edge 
    CCTACTTTCT CCCTGCTCTT AGGGCAACAG TACTTGTATG TATATATTTC 
    ATGATGAATG AAAATAACAG AGTTTTCACA ACTAAACGAG TTCGTGAAGC 
    ATTGGTATTT CTACCGCCTT GGCTTGGTTT ATGTACACCG AGTATGTTCA 
    GCTCCATCCT ATACAGATTT TGGGACATGT GCCTAGGGTT GAGGTTTCAT 
    ATATAGAAAG AACTGAACAA ACTCGGTGTA CATAGACCAA ACCAAGGCGG 
    TATCAACTAC TAATACCCTA TCAGGAGAAT CCAGACTCTC CATATCACAC 
    CAATATAAAT TTCTCTTAGT GTTCTCTCCA CCTCGACCAT TCACCATACT 
    CTCGGTGAAG TACTTTGAGT GCATTTTTGC TTATAAAGTT GTTTCTGGTA 
    TAAATCATAA TAATAAAATA AAAACTAATT TCGCACAAAA ATTCACTTGC 
    GTACTTGATT AACAAAACCT TCTATATATT ATTAGTGTTT GAGCAAATTG 
    TTAGGGCTAG AAATATTTTT TTATGTAGAC TAATCATTGA TTGACAAAAA 
    AAAAATTAAA AATTTAGACT AATCTTTTAT AGTTTACCTA AACCTACTTT 
    ACGCCGGCTT ATGGTTGAAT TCTACGTGGA TTTAAGCATA AGTTTACAAT 
    AGCCATAGAA ATTCGGAAAG TACATGCTTT GGGGCCCTTA TCATCCCTAT

AT2G41616.1

Model type
miRNA
Short Description
MIR778a; miRNA
Curator Summary
Encodes a microRNA that targets several SET domain-containing genes including SUVH6. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGGCUUGGUUUAUGUACACCG
Link
InterPro Scan - TAIR

AT2G41620.1

Model type
Protein coding
Short Description
Nucleoporin interacting component (Nup93/Nic96-like) family protein
Computational Description
Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: transport; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT3G57350.1); Has 357 Blast hits to 350 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 130; Plants - 48; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR