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GT17230

CSHL Arabidopsis genetrap mutant lines

Original: GT17230

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17230

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 145984 [Map]; Strand: c
      • AT4G00335.1 - [+] show detail - RING-H2 finger B1A
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00335.3 - [+] show detail - RING-H2 finger B1A
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00335.2 - [+] show detail - RING-H2 finger B1A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17230 - 3-prime edge
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTCG 
    CCAGCATTTA TTCTTCACCG GAGAATCACG ACATAATCAA AATCTCCGGC
    GAAATCTCAT GTTATCTTCG TTATTGCTCT CATCGGTTAT TTATTCCATC
    TTTTTCGGTT TTCGTGTATT TTTTGTTTTT TGGTCTTTTC GGCTTCTTCA
    ATTTTAGGGT TCGCGTATTG TTTAGTGTTG TTTAGCTTCT GATTTAGATG
    TGCTTACTGT GTTCATGTGT TTGGGATTTG GCTAAATCGT GTTCATGTTG
    TTGTCTATTC TTATGAGAAG ATCTTATGGT AGAGTTACAT ATCAATGATG
    TTACCAATTT TGAAGGTTAT TGTGTTGTGT TTGATTAAAA TTGGTTGAAG
    TGTGAAATGC TTTTGCTCGA GTCACTGTTT TCATTGCAAC TTGACTGAAT
    CCTAGAGGTT GTTTTAGAAT ATAGATTCAA GTTTCAGCTA TTGATGGGAC
    ATTACACAGA GCATAAGGAA CATTCCCATA CCTTTGTGTT TCTTATGGAT
    AACTTTGGCA TCAGATCAAC TTTTTCTTTT GTCATTTTGC TTACTAACAC
    TGTAATAATC ACTTGTTATT GGGGTTTCTC AAGTCTGCTT TGA

AT4G00335.1

Model type
Protein coding
Short Description
RING-H2 finger B1A
Computational Description
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 5425 Blast hits to 5419 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1535; Fungi - 417; Plants - 2568; Viruses - 6; Other Eukaryotes - 899 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00335.2

Model type
Protein coding
Short Description
RING-H2 finger B1A
Computational Description
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00335.3

Model type
Protein coding
Short Description
RING-H2 finger B1A
Computational Description
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR