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GT17231

CSHL Arabidopsis genetrap mutant lines

Original: GT17231

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17231

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3510989 [Map]; Strand: w
      • AT3G11200.2 - [+] show detail - alfin-like 2
        Distance: -437; Region: promoter
      • AT3G11200.1 - [+] show detail - alfin-like 2
        Distance: -362; Region: promoter
      • AT3G11210.1 - [+] show detail - SGNH hydrolase-type esterase superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: GT17231 - 3-prime edge 
    AATGTGATAA AGCTTTGCTT TAGATTGTTT ACATTACAAG TGTCTCTGCT 
    ATAATCTGAT TCAGTTTCGC TCGAAAAACG TTACCATTTT AAAGTTTATA 
    CTTATCTAAA TCTTAAATCA CAGAAACACA CCAAGTTTGT GTTCAAGTAA 
    TTTCTTTTTT TCTTGTTTAC ATTTTACAGA CATTAACAAA TGTCTGAAAC 
    TCATCACATA ACACTCCTCC AGACAGGGGT TTAGTGTTTT GAAGGTAAAA 
    TCACAAAGTA ACTAAAATTT GGGCCGATAA CAAAAAAGTC GCTTAGGAGA 
    TTGGACTTAT TTGGGCCTAA AACCTAACAC TTAAGGGCCC AACTAAAATG 
    CCATTTACCT AAAAAGCGAC GCATCTTCGT CTACTACCAA ACCTTTTCGC 
    TGACGCAACC AAACTCCCAA AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26017975 [Map]; Strand: c
      • AT5G65130.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17231 - 5-prime edge 
    CCTACTTTCT CCCTGACCTC CTCTGTTTTG TTCTGTTTCT CGATCTGAGG 
    CAGTGGAAGA TCAGAACTAT TGCAGATGGA TTCGATCTTT GCGTTGATAG 
    ACGGAGACAA TATCTGTTTA TAGTGTCCTT GACGAACAAT GTCTGGGAAA 
    TTGAGACGAG CGTTGTCTCC TCTGATCTTA TGAGCTGCTT GATCGTAAGC 
    TAATGCAGCT TCTTGAGCCG TTTCGAACGT ACCGAGCCAT AACCGGGTTC 
    GGTTTTTAGG TAGCCGAATC TCAGCTACCC ATTTACCCCA TTGCCTCTGT 
    CTTACGCCTC GGTATAGTTT AACCGGTTTA GTTGCTACGT CGATTTTCTT 
    CATTGAGGTT GGTTTAGCGG TGAGAAGATG ACTACCAGCG CGACGACGAG 
    ATTGGTTTTG CCGGAGATGT AACTCTGTCT GAATTTGGAG GATTTGTGTT 
    GGAGTGAGCT GGTTTAGCCC AATCGGACCG GTTTGGTTAG ATACCGGTAA 
    GACTTGGTCA TTATTAGGGA TGAAATTAGG AGTTAATGGT TTTGGATTTG 
    ATGAATTCGA AGTAGAAGAA GATGAAGTTA CCTTCATGAA TGGTTCAAGA 
    GCTTCCATGA ACTCGTCTAC GTAAGCATTC ATGTTTAAAG CCATTGCCAT 
    TTGTATACAA TAACCAAAAT ACATAAATAA ACTAATAAAG ATTGGAGAAA 
    CACAGAGAAG ACGCCCTAAT TAAGAAAACG AATTGACTAT ATTATGGAAG 
    AAAAAAAAGT AGAAACGAAG ATTTT

AT3G11200.1

Model type
Protein coding
Short Description
alfin-like 2
Curator Summary
AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 1527 Blast hits to 1482 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 758; Fungi - 235; Plants - 458; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11200.2

Model type
Protein coding
Short Description
alfin-like 2
Curator Summary
AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11210.1

Model type
Protein coding
Short Description
SGNH hydrolase-type esterase superfamily protein
Computational Description
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G38180.1); Has 768 Blast hits to 767 proteins in 294 species: Archae - 0; Bacteria - 304; Metazoa - 76; Fungi - 152; Plants - 166; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65130.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G39780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR