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GT17233

CSHL Arabidopsis genetrap mutant lines

Original: GT17233

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17233

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17233 - 3-prime edge 
    TTAAAATAAT TTTATTTATG TACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7229703 [Map]; Strand: w
      • AT2G16670.1 - [+] show detail - transposable element gene
        Distance: -884; Region: promoter
    Flanking Genome Sequence: GT17233 - 5-prime edge 
    CTTTCTCCCT GGCTTTAGAT TGCCTCCAAA AGCCATTAAT TAGTGTCTCT 
    AAAAGCCTTA GAGACACTAA TGTTCCACTA AGATATATAT GGCACCGGTC 
    GAATCAAATG TGTCGAAATA AAAATGTGAT TTCATTTTAC CTTTATAAAC 
    CAAAAGGAAA ATATATCGGG CTGCTTTTGT ACTCATGAGT TTCTTTAGTT 
    ACACAGTTTT TCAACCACAC AACTTAAATT TTATATCCGG ACTAGTTATC 
    CAAACTCTGG AAAAAGGTTG AATTCAACAA CATTAATTTC TAATTCTAAA 
    TCCTACGATT TAAAAGGTCT TCTTGAAAAT TTAAACAAAG TCAAATGAAA 
    CAAAATAACA CTATTAAGCC GAAATCTAAA GCATAAATTG TTAATCTCAA 
    TCCTGAAGAT AGATCCGAAT TTGAAATTTA AAAATTTATA AATTGGAAAT 
    CCAGACGCCT AATCTAAATT TTTAGATATT ATTAGAGAAT AAATGATCAA 
    CTGGAAAAAG TGCTGATAAA TTTTTAGATA TTACCGAAAC AGAAAATATT 
    TGTAAGAAGG AAATGACAAA AAGAAACAAA TAATATGTCT AACGATAATT 
    AGTGACGTAA GGAAATATCT TACCTACATA CAAATAAAAG CAGTGCGCAA 
    GTGGGTGATG TTGTTTT

AT2G16670.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.2e-190 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR