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GT17272

CSHL Arabidopsis genetrap mutant lines

Original: GT17272

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17272

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23189037 [Map]; Strand: w
      • AT3G62690.1 - [+] show detail - AtL5
        Distance: -2336; Region: intergenic
      • AT3G62700.1 - [+] show detail - multidrug resistance-associated protein 10
        Distance: 1230; Region: intergenic
    Flanking Genome Sequence: GT17272 - 3-prime edge 
    ACTTTCTCTC TGATTCTAAC CTTATTGTGC GCCTAGCTAG CAGTATTCTA 
    AACGTTGTGA AATACAAACT CTTAATCAAT TTTATGTTTT TAGTTTTTTT 
    ACTTATGAAT CCATTTTACT TTTTCGGAAT TATCCATTTT TCGTTCTAAC 
    TCTTTTTCAA ATGTGTCTTT TTATTTCTTT CTCTTTTTCT TGACTATTAA 
    GAAACCTCCC AGCTTTAATA CAATTTTGGT GGATAAACCT GTCAATGGTA 
    TTTCTTTTTA TATAAAAGGT GATAATCTGT ATTGCATATT GATATTCGAA 
    TTCAATTTTT AAGTACTTTA TGATAATTTA GAAATATATA TAATATAGTG 
    TGTGTCTAGG AAAATAAGAA AGTTGCACTG TACTGAAATA AAAGTAGAAG 
    ACGAGTAACT ATCATCAGAC CTATATAAAG TATGATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3526311 [Map]; Strand: c
      • AT5G11090.1 - [+] show detail - serine-rich protein-related
        Distance: 465; Region: intergenic
      • AT5G11100.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -6091; Region: intergenic
    Flanking Genome Sequence: GT17272 - 5-prime edge 
    CTTTCTCCCT GGGTCAGTCA GCTATCTCTT TTACCAAAAC ACTTTTTTTC 
    CATTTCCCTC CTATGTAAAT TTTGTCTTCA GTCATGTTTT TCCCTCCATA 
    GATTTTTCGT TGTTTTTTTT TTTATAGGCC CAAAAAGGGA AAACCTTTCC 
    CCCCCCTTTG GGTTTGGGTT TAAAGGGATT TTTCCACAAA TTTATTTGGG 
    TAATCCCCCA ATCCCCCCGG AATTTTCAGG CCCCGGGAAA AAAAGAATTT 
    AAAACTCCTT CCCCAAAGGA ACCCGGGAAA AAAAAAAAAA AATTCAAAAG 
    GCCCCCGAAA ATTTACCTCC AAAAAAAGGG AGGTAACTTA AACGGGAAAA 
    AAAAAAAAGG GGGGGGAATT CCCGGGCCCG CAAAAAAACC CTTCCGGGGA 
    AAAAAAACCC CCCCTTTCCG GGGAAAAACC ACCCCGGAAA GGGGGAAAAA 
    CCCCGGGGAA AGGGGAAAAA AAAAGTTTTT TTTGGGGGGC CCAAAAAAAA 
    AAAAGGTTTT TGTGAAAAAA AAATCCCCAT TGGGGGGGGG GAGAGGGAAA 
    ACCCCTTTTG GTTCAAAAAA AAAAAAAA

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62700.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 10
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 10 (MRP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 4 (TAIR:AT2G47800.1); Has 708251 Blast hits to 364353 proteins in 4024 species: Archae - 13144; Bacteria - 571430; Metazoa - 13503; Fungi - 8752; Plants - 6721; Viruses - 16; Other Eukaryotes - 94685 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11090.1

Model type
Protein coding
Short Description
serine-rich protein-related
Computational Description
serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11100.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR