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GT17273

CSHL Arabidopsis genetrap mutant lines

Original: GT17273

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17273

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3500533 [Map]; Strand: c
      • AT3G11170.1 - [+] show detail - fatty acid desaturase 7
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17273 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCTT CCGTTTTCAT CCCTATAATT 
    GGATGATTCC AAAGAACCAA TCGAACAAAT TGGTCTTTAT CCATATCTCT
    TCAAATAGCT TTAGGACATA ATTGGTCTCT CAGGTAACAA GCTGTCATTA
    TCATCATACT CATCATGTTG CTAGTAGACC AACCTAATTG GCAACTGTTT
    GTTGGTTTTG CAACTGTGTA ATCTGCTTTG AATTGTGAAC AAAATTATTG
    ATTTATGTTG ATTACATTGC AGTGGACATG GTAGTTTCTC AAATGATCCG
    AAGTTGAACA GTGTGGTCGG TCATCTTCTT CATTCCTCAA TTCTGGTCCC
    ATACCATGGC TGGTGAGTTT TGCTTTCAGA CCATTCATCT CACTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23353356 [Map]; Strand: w
      • AT3G63200.1 - [+] show detail - PATATIN-like protein 9
        Distance: 5792; Region: intergenic
      • AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: 259; Region: intergenic
    Flanking Genome Sequence: GT17273 - 5-prime edge
    TCCCTGGGAC TCTAACCTCA CTACTTGCGG ACACTATTAG AAACGGCCCA 
    TATCTGGCCC GTATTATTAC GGACCGGCCT AATTATGCAT GATATAGCCC
    ATCGATATTT AACCACTCAA AATCCCCTCC CCTGCATCTA TGGTTTGATC
    TGGTTTGGTT TGATTGCGAT TAGAGTTATT ATATACTTAC TTGTAAACAC
    CAAATCAGAC TCATATCACA GGATAAAAAC ACGAGTTCAA TGGCTTCCCA
    GAAACCTTTC TCGACTGAAA AATGAGTCTG AGTTCAGAAT CTGAGGTAAA
    CGGTCACAAA ACTTGATATA

AT3G11170.1

Model type
Protein coding
Short Description
fatty acid desaturase 7
Curator Summary
Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.
Computational Description
fatty acid desaturase 7 (FAD7); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to cold, response to wounding, fatty acid biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: plastid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has 2938 Blast hits to 2935 proteins in 698 species: Archae - 0; Bacteria - 1234; Metazoa - 17; Fungi - 265; Plants - 926; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63200.1

Model type
Protein coding
Short Description
PATATIN-like protein 9
Computational Description
PATATIN-like protein 9 (PLP9); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63210.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Curator Summary
encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR