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Mutant Lines
GT17286

GT17286

CSHL Arabidopsis genetrap mutant lines

Original: GT17286

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17286

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 30354475 [Map]; Strand: c
  - AT1G80770.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: -640; Region: promoter
  - AT1G80770.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: -640; Region: promoter
Flanking Genome Sequence: GT17286 - 3-prime edge
```
AGCGTGATAA TAGTCGTGTC AAACAACAAA CAATTTCTCC CAATCTTTTT 
ACTCCATTAA TCGTTGTTCG ATCATCCGAT AATCTTTTGA ATCCCTGAGC 
AGATCATAAC AAAAACAGAG CCGTGCGTGA ACACAAGCAA ACCATACCAA 
CAGTCGAGAA CATGAAATAT TTATACCGCG ATTAATTCTT CACGTGCTTC 
ATCTCACTCG A
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 23362554 [Map]; Strand: w
- AT1G63020.2 - [+] show detail - nuclear RNA polymerase D1A
  Distance: -67; Region: promoter
- AT1G63020.1 - [+] show detail - nuclear RNA polymerase D1A
  Distance: 0; Region: exon1 (5UTR)

ATCCTACTTT ATCCCTGCCA AAGGAAACGG GAAAAAGTGA GAAAGCAGAG 
AAAACGAAAA AAAACTCTTC TCTAAGTCCA ATGGGGACTT TGGAATGTGA 
GACACCAAAA AAAAAAAAAG GGGGGGGGGG GGGGGGGAAT TTTGGAAAAC 
CCCCCTGGGG GGGGGCCCTT TTTTTCCCCT TTTTGAGGGA CCCCTTTTTC 
TTTTTGGAAA ATTTTTTTCC CCCCCGGGGG GGATTTTTTA AAACCCTTAA 
GAATTTCGGG GTCCGGGAAT TTTCCCCTTT TTGGAAAAAC CCCAAAACGG 
GGAAAAAAAA AAAAAAGGAA AAATCCCCCC CCCAAAAAAA ATTAAAAGGG 
GGGGAAAGTT TTTTTTTTTG GGGCCTTTTT TAAAACCGAA AAAAAGTTTT 
TAAAAAAAA

AT1G63020.1

Model type: Protein coding
Short Description: nuclear RNA polymerase D1A
Curator Summary: Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.
Computational Description: nuclear RNA polymerase D1A (NRPD1A); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), Protein of unknown function DUF3223 (InterPro:IPR021602), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B (TAIR:AT2G40030.1); Has 18758 Blast hits to 17462 proteins in 6889 species: Archae - 580; Bacteria - 5923; Metazoa - 1639; Fungi - 1387; Plants - 5197; Viruses - 287; Other Eukaryotes - 3745 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G63020.2

Model type: Protein coding
Short Description: nuclear RNA polymerase D1A
Curator Summary: Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.
Computational Description: nuclear RNA polymerase D1A (NRPD1A); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), Protein of unknown function DUF3223 (InterPro:IPR021602), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D1B (TAIR:AT2G40030.1).
Link: InterPro Scan - TAIR

AT1G80770.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: pigment defective 318 (PDE318); FUNCTIONS IN: ferrous iron transmembrane transporter activity, GTP binding; INVOLVED IN: ferrous iron transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), Ferrous iron transport protein B, N-terminal (InterPro:IPR011619); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 11067 Blast hits to 11052 proteins in 2859 species: Archae - 320; Bacteria - 7505; Metazoa - 379; Fungi - 348; Plants - 242; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80770.2

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: pigment defective 318 (PDE318); FUNCTIONS IN: GTP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1).
Link: InterPro Scan - TAIR