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GT17289

CSHL Arabidopsis genetrap mutant lines

Original: GT17289

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17289

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23189092 [Map]; Strand: c
      • AT3G62690.1 - [+] show detail - AtL5
        Distance: -2391; Region: intergenic
      • AT3G62700.1 - [+] show detail - multidrug resistance-associated protein 10
        Distance: 1175; Region: intergenic
    Flanking Genome Sequence: GT17289 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCCCTA GTTAGAATGG TGTTTAGCGT 
    GTAAGCTGAT TAATCGTCGC TTCAAAATGC ATGCATGCAT GCATATTATT 
    AGTTCGTGAT TTCTCTATAT TCAATGTTTT TGTTTAATTC AAAATGGCTA 
    AACTTTAAGA AGCTCTGATA TTTTACAATC AACGGAACCG TGTGAAAGTC 
    GTAAATAAAT GATGTAACAG CCAGTGAAGT TACACTTCGC TAGAAGTCGT 
    GGCCAGCTCA TTCATCTCAC TCGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23189020 [Map]; Strand: c
      • AT3G62690.1 - [+] show detail - AtL5
        Distance: -2319; Region: intergenic
      • AT3G62700.1 - [+] show detail - multidrug resistance-associated protein 10
        Distance: 1247; Region: intergenic
    Flanking Genome Sequence: GT17289 - 5-prime edge 
    CCTACTTTCT CCCTGATTCT AAACTTATTG TGCGCCTAGC TAGCAGTATT 
    CTAAACGTTG TGAAATACAA ACTCTTAATC AATTTTATGT TTTTAGTTTT 
    TTTACTTATG AATCCATTTT ACTTTTTCGG AATTATCCAT TTTTCGTTCT 
    AACTCTTTTT CAAATGTGTC TTTTTATTTC TTTCTCTTTT TCTTGACTAT 
    TAAGAAACCT CCCAGCTTTA ATACAATTTT GGTGGATAAA CCTGTCAATG 
    GTATTTCTTT TTATATAAAA GGTGATAATC TGTATTGCAT ATTGATATTC 
    GAATTCAATT TTTAAGTACT TTATGATAAT TTAGAAATAT ATATAATATA 
    GTGTGTGTCT AGGAAATAAG AAAGTTGCAC TGTACTGAAA TAAAAGTAGA 
    AGACGAGTAA CTATCATCAG ACCTATATAA AGTATGATA

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62700.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 10
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 10 (MRP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 4 (TAIR:AT2G47800.1); Has 708251 Blast hits to 364353 proteins in 4024 species: Archae - 13144; Bacteria - 571430; Metazoa - 13503; Fungi - 8752; Plants - 6721; Viruses - 16; Other Eukaryotes - 94685 (source: NCBI BLink).
Link
InterPro Scan - TAIR